RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CXorf38Q8TB03 319 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 MEIS3Q99687 375 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 CAPS2Q9BXY5 557 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 TRIM35Q9UPQ4 493 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.4■□□□□ 0.06
CSPG4-201ENST00000308508 TROQ12816 1431 aaPredicted RBP15.39■□□□□ 0.06
CSPG4-201ENST00000308508 KRT3P12035 628 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 PEX26Q7Z412 305 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 KLHL7Q8IXQ5 586 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 WDR46O15213 610 aaKnown RBP15.39■□□□□ 0.05
CSPG4-201ENST00000308508 ASXL1Q8IXJ9 1541 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 GNGT1P63211 74 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 PDCD2Q16342 344 aaPredicted RBP15.39■□□□□ 0.05
CSPG4-201ENST00000308508 MGARPQ8TDB4 240 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 SAR1BQ9Y6B6 198 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 NLRP12P59046 1061 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 ZMAT2Q96NC0 199 aaKnown RBP15.39■□□□□ 0.05
CSPG4-201ENST00000308508 PLCG2P16885 1265 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 CBX8Q9HC52 389 aa15.39■□□□□ 0.05
CSPG4-201ENST00000308508 RNF113AO15541 343 aaKnown RBP15.38■□□□□ 0.05
CSPG4-201ENST00000308508 RPS6KA2Q15349 733 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 TAF12Q16514 161 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 CASC4Q6P4E1 433 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 FAM71BQ8TC56 605 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 SDCCAG3Q96C92 435 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 BCRP11274 1271 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 ARHGAP4P98171 946 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 CCDC125Q86Z20 511 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 ST5P78524 1137 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 HAUS3Q68CZ6 603 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 EMILIN1Q9Y6C2 1016 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 NME9Q86XW9 330 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 PLIN2Q99541 437 aa15.38■□□□□ 0.05
CSPG4-201ENST00000308508 SCAF11Q99590 1463 aaKnown RBP15.38■□□□□ 0.05
CSPG4-201ENST00000308508 POLR2DO15514 142 aaKnown RBP15.37■□□□□ 0.05
CSPG4-201ENST00000308508 EVI5O60447 810 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 BAG2O95816 211 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 ANO1Q5XXA6 986 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 CUTAO60888 179 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 ALDH1L1O75891 902 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 SLC12A2P55011 1212 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 CCDC93Q567U6 631 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 CCDC84Q86UT8 332 aaPredicted RBP15.37■□□□□ 0.05
CSPG4-201ENST00000308508 IFIH1Q9BYX4 1025 aaKnown RBP15.37■□□□□ 0.05
CSPG4-201ENST00000308508 BCL2L12Q9HB09 334 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 ANKRD36BQ8N2N9 1353 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 CHST3Q7LGC8 479 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 CTTNBP2NLQ9P2B4 639 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 EXOC7Q9UPT5 735 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 PLS1Q14651 629 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 TRIM58Q8NG06 486 aa15.37■□□□□ 0.05
CSPG4-201ENST00000308508 USP26Q9BXU7 913 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 EIF2AQ9BY44 585 aaKnown RBP15.36■□□□□ 0.05
CSPG4-201ENST00000308508 CLTAP09496 248 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 SESN3P58005 492 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 CCDC51Q96ER9 411 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 RNF34Q969K3 372 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 KRT12Q99456 494 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 BEND3Q5T5X7 828 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 SFMBT2Q5VUG0 894 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 VEZTQ9HBM0 779 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 EFCAB8A8MWE9 144 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 ZNF804AQ7Z570 1209 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 IFNL2Q8IZJ0 200 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 VPS37BQ9H9H4 285 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 CHPF2Q9P2E5 772 aa15.36■□□□□ 0.05
CSPG4-201ENST00000308508 DEXIO95424 95 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 MAGEA1P43355 309 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 PDZD8Q8NEN9 1154 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 DRC3Q9H069 523 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 WWC3Q9ULE0 1092 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 MX2P20592 715 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 GABPAQ06546 454 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 DCUN1D2Q6PH85 259 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 CCDC13Q8IYE1 715 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 SBNO2Q9Y2G9 1366 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 ZNF202O95125 648 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 PARP1P09874 1014 aaKnown RBP15.35■□□□□ 0.05
CSPG4-201ENST00000308508 ZNF174Q15697 407 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 KIF14Q15058 1648 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 GRIN2BQ13224 1484 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 BCAS4Q8TDM0 211 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 MORC4Q8TE76 937 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 GRK7Q8WTQ7 553 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 SEPT10Q9P0V9 454 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 CCNT1O60563 726 aaKnown RBP15.35■□□□□ 0.05
CSPG4-201ENST00000308508 RPS6KB1P23443 525 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 ZBTB21Q9ULJ3 1066 aa15.35■□□□□ 0.05
CSPG4-201ENST00000308508 ANKRD42Q8N9B4 389 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.34■□□□□ 0.05
CSPG4-201ENST00000308508 POGZQ7Z3K3 1410 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 SERPINB6P35237 376 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 PHEXP78562 749 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 SIRT1Q96EB6 747 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 LIG3P49916 1009 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 KLHL30Q0D2K2 578 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 PSMB7Q99436 277 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 TYW1Q9NV66 732 aaKnown RBP15.34■□□□□ 0.05
CSPG4-201ENST00000308508 AMFRQ9UKV5 643 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 GOLGA8QA0A0J9YX86 632 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms