RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CCT5P48643 541 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 METAP2P50579 478 aaKnown RBP eCLIP16.35■□□□□ 0.21
SDC1-201ENST00000254351 ANTXR2P58335 489 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 AKAP4Q5JQC9 854 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 DHX37Q8IY37 1157 aaKnown RBP16.35■□□□□ 0.21
SDC1-201ENST00000254351 SLC26A6Q9BXS9 759 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 PIK3C2AO00443 1686 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 BTBD18B2RXH4 712 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 POSTNQ15063 836 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 FBXW10Q5XX13 1052 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 PUS7LQ9H0K6 701 aaKnown RBP16.35■□□□□ 0.21
SDC1-201ENST00000254351 BABAM1Q9NWV8 329 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 PALLDQ8WX93 1383 aa16.35■□□□□ 0.21
SDC1-201ENST00000254351 RNF113AO15541 343 aaKnown RBP16.34■□□□□ 0.21
SDC1-201ENST00000254351 CEMIPQ8WUJ3 1361 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 HOXB7P09629 217 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 RFX5P48382 616 aaPredicted RBP16.34■□□□□ 0.21
SDC1-201ENST00000254351 TBX2Q13207 712 aaPredicted RBP16.34■□□□□ 0.21
SDC1-201ENST00000254351 TRIM29Q14134 588 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 ZMYM1Q5SVZ6 1142 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 CEP112Q8N8E3 955 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 ZKSCAN3Q9BRR0 538 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 DSCC1Q9BVC3 393 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 VPS16Q9H269 839 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 COPRSQ9NQ92 184 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 SAMM50Q9Y512 469 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 FXR1P51114 621 aaKnown RBP eCLIP16.34■□□□□ 0.21
SDC1-201ENST00000254351 MNAT1P51948 309 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 JMYQ8N9B5 988 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 SMARCC1Q92922 1105 aaPredicted RBP16.34■□□□□ 0.21
SDC1-201ENST00000254351 JCADQ9P266 1359 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 RGPD1P0DJD0 1748 aa16.34■□□□□ 0.21
SDC1-201ENST00000254351 hCG_1642624A0A1W2PR95 340 aa16.33■□□□□ 0.21
SDC1-201ENST00000254351 B4E1Z4 1266 aa16.33■□□□□ 0.21
SDC1-201ENST00000254351 ZNF213O14771 459 aa16.33■□□□□ 0.21
SDC1-201ENST00000254351 ADORA1P30542 326 aa16.33■□□□□ 0.21
SDC1-201ENST00000254351 RRP12Q5JTH9 1297 aaKnown RBP16.33■□□□□ 0.21
SDC1-201ENST00000254351 FCHSD1Q86WN1 690 aa16.33■□□□□ 0.21
SDC1-201ENST00000254351 NUP88Q99567 741 aaPredicted RBP16.33■□□□□ 0.2
SDC1-201ENST00000254351 PSD3Q9NYI0 1048 aa16.33■□□□□ 0.2
SDC1-201ENST00000254351 MATR3P43243 847 aaKnown RBP eCLIP16.32■□□□□ 0.2
SDC1-201ENST00000254351 CTR9Q6PD62 1173 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 AFAP1L1Q8TED9 768 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 AGXT2Q9BYV1 514 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 HELLSQ9NRZ9 838 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 USP54Q70EL1 1684 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 RNF225M0QZC1 329 aaPredicted RBP16.32■□□□□ 0.2
SDC1-201ENST00000254351 GUCY1A2P33402 732 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 NR5A1Q13285 461 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 SCARF1Q14162 830 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 PTPAQ15257 358 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 RESP18Q5W5W9 173 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 PPM1EQ8WY54 764 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 HPSEQ9Y251 543 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 SH3TC1Q8TE82 1336 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 NCOA7Q8NI08 942 aa16.32■□□□□ 0.2
SDC1-201ENST00000254351 ZNF496Q96IT1 587 aaPredicted RBP16.32■□□□□ 0.2
SDC1-201ENST00000254351 METTL22Q9BUU2 404 aaPredicted RBP16.32■□□□□ 0.2
SDC1-201ENST00000254351 CRYBG1Q9Y4K1 1723 aa16.31■□□□□ 0.2
SDC1-201ENST00000254351 GGCXP38435 758 aa16.31■□□□□ 0.2
SDC1-201ENST00000254351 CORO7P57737 925 aa16.31■□□□□ 0.2
SDC1-201ENST00000254351 NUTM2AQ8IVF1 878 aaPredicted RBP16.31■□□□□ 0.2
SDC1-201ENST00000254351 PSMB7Q99436 277 aa16.31■□□□□ 0.2
SDC1-201ENST00000254351 NAPGQ99747 312 aaPredicted RBP16.31■□□□□ 0.2
SDC1-201ENST00000254351 GUCY2CP25092 1073 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
SDC1-201ENST00000254351 KCTD19Q17RG1 926 aaPredicted RBP16.3■□□□□ 0.2
SDC1-201ENST00000254351 CYB5R4Q7L1T6 521 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 KRI1Q8N9T8 703 aaKnown RBP16.3■□□□□ 0.2
SDC1-201ENST00000254351 SECISBP2LQ93073 1101 aaKnown RBP16.3■□□□□ 0.2
SDC1-201ENST00000254351 PCDHB6Q9Y5E3 794 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 CD44P16070 742 aaKnown RBP16.3■□□□□ 0.2
SDC1-201ENST00000254351 NR1I3Q14994 352 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 CAGE1Q8TC20 777 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 FAM71BQ8TC56 605 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 MAP3K14Q99558 947 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 CHP1Q99653 195 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 BLZF1Q9H2G9 400 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 ZBTB3Q9H5J0 574 aa16.3■□□□□ 0.2
SDC1-201ENST00000254351 ZNF185O15231 689 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 FOXP2O15409 715 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 ZNF790Q6PG37 636 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 KAT2BQ92831 832 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 EPSTI1Q96J88 318 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 MYBL2P10244 700 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 ZAP70P43403 619 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 IP6K1Q92551 441 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 MYO6Q9UM54 1294 aa16.29■□□□□ 0.2
SDC1-201ENST00000254351 MARF1Q9Y4F3 1742 aaKnown RBP16.28■□□□□ 0.2
SDC1-201ENST00000254351 N4BP3O15049 544 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 SYF2O95926 243 aaKnown RBP16.28■□□□□ 0.2
SDC1-201ENST00000254351 MB21D2Q8IYB1 491 aaPredicted RBP16.28■□□□□ 0.2
SDC1-201ENST00000254351 CCDC148Q8NFR7 591 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 MMS19Q96T76 1030 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 KAT14Q9H8E8 782 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 TAB2Q9NYJ8 693 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 TRPM3Q9HCF6 1732 aaPredicted RBP16.28■□□□□ 0.2
SDC1-201ENST00000254351 FAM205CA6NFA0 338 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 GOLGA8AA7E2F4 631 aa16.28■□□□□ 0.2
SDC1-201ENST00000254351 ZNF18P17022 549 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms