RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 ZNF292O60281 2723 aa0.65□□□□□ -2.31
TRAV40-201ENST00000390467 CELSR2Q9HCU4 2923 aa0.65□□□□□ -2.31
TRAV40-201ENST00000390467 CSPG4Q6UVK1 2322 aa0.64□□□□□ -2.31
TRAV40-201ENST00000390467 MINOS1Q5TGZ0 78 aa0.64□□□□□ -2.31
TRAV40-201ENST00000390467 C6orf48Q9UBA6 75 aa0.64□□□□□ -2.31
TRAV40-201ENST00000390467 TRANK1O15050 2925 aa0.63□□□□□ -2.31
TRAV40-201ENST00000390467 ANK2Q01484 3957 aa0.63□□□□□ -2.31
TRAV40-201ENST00000390467 IAPPP10997 89 aa0.63□□□□□ -2.31
TRAV40-201ENST00000390467 SPRR1AP35321 89 aa0.63□□□□□ -2.31
TRAV40-201ENST00000390467 RPS27P42677 84 aaKnown RBP0.63□□□□□ -2.31
TRAV40-201ENST00000390467 RPS27LQ71UM5 84 aaKnown RBP0.63□□□□□ -2.31
TRAV40-201ENST00000390467 DEFB119Q8N690 84 aa0.63□□□□□ -2.31
TRAV40-201ENST00000390467 CREBBPQ92793 2442 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 ABCA2Q9BZC7 2435 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 DEFB130BP0DP73 79 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 DEFB130AP0DP74 79 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 H1FX-AS1Q4G0G2 97 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 Q5VSD8 79 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 CSMD3Q7Z407 3707 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 MEGF8Q7Z7M0 2845 aa0.62□□□□□ -2.31
TRAV40-201ENST00000390467 BSNQ9UPA5 3926 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 CHD9Q3L8U1 2897 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 POLR2KP53803 58 aaKnown RBP0.61□□□□□ -2.31
TRAV40-201ENST00000390467 SPINK9Q5DT21 86 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 WFDC13Q8IUB5 93 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 ARHGAP5-AS1Q96IT6 56 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 PRO0255Q9UI72 69 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 APLNQ9ULZ1 77 aa0.61□□□□□ -2.31
TRAV40-201ENST00000390467 IGLV5-48A0A075B6I7 105 aa0.6□□□□□ -2.31
TRAV40-201ENST00000390467 SPRR1BP22528 89 aa0.6□□□□□ -2.31
TRAV40-201ENST00000390467 POLQO75417 2590 aa0.6□□□□□ -2.31
TRAV40-201ENST00000390467 NOTCH1P46531 2555 aa0.6□□□□□ -2.31
TRAV40-201ENST00000390467 PRRC2CQ9Y520 2896 aaKnown RBP0.6□□□□□ -2.31
TRAV40-201ENST00000390467 A0A0C4DFX4 3053 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 ATRQ13535 2644 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 AKAP6Q13023 2319 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 A0A0D9SG42 100 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 RPL39P62891 51 aaKnown RBP0.59□□□□□ -2.31
TRAV40-201ENST00000390467 WT1-ASQ06250 92 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 WFDC10BQ8IUB3 73 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 DEFB105AQ8NG35 78 aa0.59□□□□□ -2.31
TRAV40-201ENST00000390467 FBN2P35556 2912 aa0.59□□□□□ -2.32
TRAV40-201ENST00000390467 SPTA1P02549 2419 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 SRRM2Q9UQ35 2752 aaKnown RBP0.58□□□□□ -2.32
TRAV40-201ENST00000390467 LINC01590Q5TEZ4 76 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 KAAG1Q9UBP8 84 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 CHD7Q9P2D1 2997 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 HECTD1Q9ULT8 2610 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 CEP290O15078 2479 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 PKD1L2Q7Z442 2459 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 TTC28Q96AY4 2481 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 LYSTQ99698 3801 aa0.58□□□□□ -2.32
TRAV40-201ENST00000390467 MMP24-AS1A0A0U1RRL7 71 aa0.57□□□□□ -2.32
TRAV40-201ENST00000390467 KLK9Q2XQG4 91 aa0.57□□□□□ -2.32
TRAV40-201ENST00000390467 RPL39LQ96EH5 51 aaKnown RBP0.57□□□□□ -2.32
TRAV40-201ENST00000390467 TTTY10Q9BZA0 68 aa0.57□□□□□ -2.32
TRAV40-201ENST00000390467 UBR5O95071 2799 aaPredicted RBP0.57□□□□□ -2.32
TRAV40-201ENST00000390467 CHD6Q8TD26 2715 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 DEFB131AP59861 70 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 S4R3F8 94 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 CHD8Q9HCK8 2581 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 ACACAQ13085 2346 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 BDP1A6H8Y1 2624 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 NBASA2RRP1 2371 aa0.56□□□□□ -2.32
TRAV40-201ENST00000390467 PRKDCP78527 4128 aaKnown RBP0.56□□□□□ -2.32
TRAV40-201ENST00000390467 OTOGQ6ZRI0 2925 aa0.55□□□□□ -2.32
TRAV40-201ENST00000390467 H3BUA1 57 aa0.55□□□□□ -2.32
TRAV40-201ENST00000390467 VWFP04275 2813 aa0.55□□□□□ -2.32
TRAV40-201ENST00000390467 AKAP13Q12802 2813 aa0.55□□□□□ -2.32
TRAV40-201ENST00000390467 EP300Q09472 2414 aaPredicted RBP0.54□□□□□ -2.32
TRAV40-201ENST00000390467 PRLHP81277 87 aa0.54□□□□□ -2.32
TRAV40-201ENST00000390467 LEAP2Q969E1 77 aa0.54□□□□□ -2.32
TRAV40-201ENST00000390467 ZNF469Q96JG9 3925 aaPredicted RBP0.54□□□□□ -2.32
TRAV40-201ENST00000390467 NCOR1O75376 2440 aa0.54□□□□□ -2.32
TRAV40-201ENST00000390467 CELSR1Q9NYQ6 3014 aa0.54□□□□□ -2.32
TRAV40-201ENST00000390467 PIEZO1Q92508 2521 aa0.54□□□□□ -2.32
TRAV40-201ENST00000390467 SETD2Q9BYW2 2564 aaPredicted RBP0.53□□□□□ -2.32
TRAV40-201ENST00000390467 FAT2Q9NYQ8 4349 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 NAV2Q8IVL1 2488 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 NBPF19A0A087WUL8 3843 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 H3BSH0 61 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 M0QY20 66 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 DEFB109BQ30KR1 87 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 CLPSL2Q6UWE3 100 aa0.53□□□□□ -2.32
TRAV40-201ENST00000390467 DNAH11Q96DT5 4516 aa0.53□□□□□ -2.33
TRAV40-201ENST00000390467 MGAQ8IWI9 3026 aa0.53□□□□□ -2.33
TRAV40-201ENST00000390467 WNK1Q9H4A3 2382 aa0.53□□□□□ -2.33
TRAV40-201ENST00000390467 VPS13BQ7Z7G8 4022 aa0.53□□□□□ -2.33
TRAV40-201ENST00000390467 DMBT1Q9UGM3 2413 aaPredicted RBP0.53□□□□□ -2.33
TRAV40-201ENST00000390467 TENM4Q6N022 2769 aa0.52□□□□□ -2.33
TRAV40-201ENST00000390467 A8MTW9 85 aa0.52□□□□□ -2.33
TRAV40-201ENST00000390467 PRCDQ00LT1 54 aa0.52□□□□□ -2.33
TRAV40-201ENST00000390467 TNRC18O15417 2968 aaPredicted RBP0.52□□□□□ -2.33
TRAV40-201ENST00000390467 APCP25054 2843 aa0.51□□□□□ -2.33
TRAV40-201ENST00000390467 MAP1BP46821 2468 aaKnown RBP0.51□□□□□ -2.33
TRAV40-201ENST00000390467 RIF1Q5UIP0 2472 aaKnown RBP0.51□□□□□ -2.33
TRAV40-201ENST00000390467 DEFB106AQ8N104 65 aa0.51□□□□□ -2.33
TRAV40-201ENST00000390467 EPG5Q9HCE0 2579 aa0.51□□□□□ -2.33
TRAV40-201ENST00000390467 DCHS2Q6V1P9 2916 aa0.51□□□□□ -2.33
TRAV40-201ENST00000390467 KMT2AQ03164 3969 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms