RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SYS1-DBNDD2H3BUS1 97 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 SPINK4O60575 86 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 IGLV7-43P04211 117 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 DEFB1P60022 68 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 PMCHL1Q16048 86 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 DEFB136Q30KP8 78 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 ETDBQ3ZM63 59 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 FAM229BQ4G0N7 80 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 LINC00269Q8N2A0 174 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 C18orf32Q8TCD1 76 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 SVEP1Q4LDE5 3571 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 HIVEP1P15822 2718 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 IGKV3-7A0A075B6H7 116 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 TMSB15BA0A087X1C1 80 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 IGKV2D-26A0A0A0MRZ7 120 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 HIGD1CA8MV81 97 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 NUPR1O60356 82 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 BCE1O60756 84 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 RHOHQ15669 191 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 C4orf3Q8WVX3 66 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 CYP4F30PQ9H0H9 118 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 NDUFA12Q9UI09 145 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 JMJD1CQ15652 2540 aa2.46□□□□□ -2.02
NUP88-213ENST00000576862 FN1P02751 2386 aaKnown RBP2.46□□□□□ -2.02
NUP88-213ENST00000576862 NSD1Q96L73 2696 aaPredicted RBP2.45□□□□□ -2.02
NUP88-213ENST00000576862 IGLV10-54A0A075B6I4 117 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 C2orf70A6NJV1 201 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 F2Z2F3 143 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 BAALC-AS2P0C853 105 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 ZNF22P17026 224 aaPredicted RBP2.45□□□□□ -2.02
NUP88-213ENST00000576862 RBM3P98179 157 aaKnown RBP2.45□□□□□ -2.02
NUP88-213ENST00000576862 WFDC2Q14508 124 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 SPATA45Q537H7 98 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 C1orf134Q5TEV5 83 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 FAM19A2Q8N3H0 131 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 WNK1Q9H4A3 2382 aa2.45□□□□□ -2.02
NUP88-213ENST00000576862 C2CD3Q4AC94 2353 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 ANK3Q12955 4377 aaKnown RBP2.44□□□□□ -2.02
NUP88-213ENST00000576862 LOC107984156A0A0G2JMH3 177 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 MUC21A0A140T8X8 626 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 A0A1B0GUT8 65 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 CRPP02741 224 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 ACYP1P07311 99 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 ARMS2P0C7Q2 107 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 C9orf116Q5BN46 136 aaPredicted RBP2.44□□□□□ -2.02
NUP88-213ENST00000576862 PSMG4Q5JS54 123 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 ARL17AQ8IVW1 177 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 ST20-AS1Q8NBB2 130 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 ATRQ13535 2644 aa2.44□□□□□ -2.02
NUP88-213ENST00000576862 SETXQ7Z333 2677 aaKnown RBP2.44□□□□□ -2.02
NUP88-213ENST00000576862 CELSR1Q9NYQ6 3014 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 F8P00451 2351 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 CR1P17927 2039 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 IGHV3-64A0A075B6Q5 118 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 A0A0J9YX75 114 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 A0A1B0GU33 70 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 DEFB114Q30KQ6 69 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 CASC2Q6XLA1 102 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 NXT2Q9NPJ8 142 aaKnown RBP2.43□□□□□ -2.02
NUP88-213ENST00000576862 LENEPQ9Y5L5 61 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 MAST4O15021 2626 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 NF1P21359 2839 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 NBPF19A0A087WUL8 3843 aa2.43□□□□□ -2.02
NUP88-213ENST00000576862 VPS13CQ709C8 3753 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 TRAV13-2A0A0B4J235 113 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 C11orf86A6NJI1 115 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 H3BUT2 72 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 MIFP14174 115 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 DEFB131AP59861 70 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 BAGE3Q86Y29 109 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 Q8NAQ8 132 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 ODF3Q96PU9 254 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 CNFNQ9BYD5 112 aa2.42□□□□□ -2.02
NUP88-213ENST00000576862 TEP1Q99973 2627 aaKnown RBP2.42□□□□□ -2.02
NUP88-213ENST00000576862 NIPBLQ6KC79 2804 aaeCLIP2.41□□□□□ -2.02
NUP88-213ENST00000576862 TRAV21A0A0B4J279 112 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 A8MTW9 85 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 C16orf90A8MZG2 172 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 D6R8Y8 96 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 H3BVH4 76 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 RNASE3P12724 160 aaKnown RBP2.41□□□□□ -2.02
NUP88-213ENST00000576862 SPINK13Q1W4C9 94 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 CFAP126Q5VTH2 177 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 NDUFA11Q86Y39 141 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 C20orf166-AS1Q96NR2 134 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 LINC00474Q9P2X8 69 aa2.41□□□□□ -2.02
NUP88-213ENST00000576862 TIMM8BQ9Y5J9 83 aaPredicted RBP2.41□□□□□ -2.02
NUP88-213ENST00000576862 TENM1Q9UKZ4 2725 aa2.4□□□□□ -2.02
NUP88-213ENST00000576862 AKAP9Q99996 3911 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 TRAV12-3A0A0B4J271 114 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 TRBV10-3A0A0K0K1G6 114 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 KLKP1Q107X0 134 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 S100A7L2Q5SY68 101 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 LYPD5Q6UWN5 251 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 LINC00643Q86TS7 51 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 TMEM254Q8TBM7 123 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 TIMM21Q9BVV7 248 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 CDC42SE1Q9NRR8 79 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 BAHCC1Q9P281 2608 aa2.4□□□□□ -2.03
NUP88-213ENST00000576862 STAB1Q9NY15 2570 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms