RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 K7ERU9 68 aa13.64□□□□□ -0.23
VPS28-209ENST00000528142 M0QXV9 152 aa13.64□□□□□ -0.23
VPS28-209ENST00000528142 CASC10Q5T4H9 136 aa13.64□□□□□ -0.23
VPS28-209ENST00000528142 OR13C6PQ8NH95 151 aa13.64□□□□□ -0.23
VPS28-209ENST00000528142 LINC01600Q96MT4 127 aa13.64□□□□□ -0.23
VPS28-209ENST00000528142 DNAH7Q8WXX0 4024 aa13.64□□□□□ -0.23
VPS28-209ENST00000528142 TRBV10-2A0A0K0K1G8 114 aa13.62□□□□□ -0.23
VPS28-209ENST00000528142 NUPR2A6NF83 97 aa13.62□□□□□ -0.23
VPS28-209ENST00000528142 SYCNQ0VAF6 134 aa13.61□□□□□ -0.23
VPS28-209ENST00000528142 KRTAP1-5Q9BYS1 174 aa13.61□□□□□ -0.23
VPS28-209ENST00000528142 USP17L23D6RBM5 183 aa13.6□□□□□ -0.23
VPS28-209ENST00000528142 ANKRD29Q8N6D5 301 aa13.6□□□□□ -0.23
VPS28-209ENST00000528142 FAM218AQ96MZ4 157 aa13.6□□□□□ -0.23
VPS28-209ENST00000528142 TGP01266 2768 aa13.6□□□□□ -0.23
VPS28-209ENST00000528142 UBE2DNLQ8IWF7 75 aa13.6□□□□□ -0.23
VPS28-209ENST00000528142 TEN1Q86WV5 123 aa13.59□□□□□ -0.23
VPS28-209ENST00000528142 TMEM126AQ9H061 195 aa13.59□□□□□ -0.23
VPS28-209ENST00000528142 XAGE1AQ9HD64 81 aa13.59□□□□□ -0.23
VPS28-209ENST00000528142 NDUFC2-KCTD14E9PQ53 114 aa13.58□□□□□ -0.24
VPS28-209ENST00000528142 NCR3O14931 201 aa13.58□□□□□ -0.24
VPS28-209ENST00000528142 TRACP01848 142 aa13.57□□□□□ -0.24
VPS28-209ENST00000528142 SLPIP03973 132 aa13.57□□□□□ -0.24
VPS28-209ENST00000528142 H0YGX0 51 aa13.56□□□□□ -0.24
VPS28-209ENST00000528142 H3BT86 120 aa13.55□□□□□ -0.24
VPS28-209ENST00000528142 RNF151Q2KHN1 245 aa13.55□□□□□ -0.24
VPS28-209ENST00000528142 Q6ZRP5 223 aa13.54□□□□□ -0.24
VPS28-209ENST00000528142 CARD19Q96LW7 228 aa13.54□□□□□ -0.24
VPS28-209ENST00000528142 DNAH1Q9P2D7 4330 aa13.54□□□□□ -0.24
VPS28-209ENST00000528142 STARD9Q9P2P6 4700 aa13.53□□□□□ -0.24
VPS28-209ENST00000528142 IGLV6-57P01721 117 aa13.52□□□□□ -0.25
VPS28-209ENST00000528142 RPL18AQ02543 176 aaKnown RBP13.52□□□□□ -0.25
VPS28-209ENST00000528142 S100A7L2Q5SY68 101 aa13.52□□□□□ -0.25
VPS28-209ENST00000528142 PPDPFLQ8WWR9 84 aa13.52□□□□□ -0.25
VPS28-209ENST00000528142 TENM2Q9NT68 2774 aa13.51□□□□□ -0.25
VPS28-209ENST00000528142 VPREB1P12018 145 aa13.51□□□□□ -0.25
VPS28-209ENST00000528142 GAGE2EQ4V326 116 aa13.51□□□□□ -0.25
VPS28-209ENST00000528142 GAGE2DQ9UEU5 116 aa13.51□□□□□ -0.25
VPS28-209ENST00000528142 PLECQ15149 4684 aaKnown RBP13.51□□□□□ -0.25
VPS28-209ENST00000528142 A0A087WYN8 130 aa13.5□□□□□ -0.25
VPS28-209ENST00000528142 TLX1NBP0CAT3 122 aa13.5□□□□□ -0.25
VPS28-209ENST00000528142 LYSTQ99698 3801 aa13.5□□□□□ -0.25
VPS28-209ENST00000528142 LECT2O14960 151 aa13.5□□□□□ -0.25
VPS28-209ENST00000528142 J3QR89 54 aa13.49□□□□□ -0.25
VPS28-209ENST00000528142 C9orf129Q5T035 196 aaKnown RBP13.48□□□□□ -0.25
VPS28-209ENST00000528142 TRBV10-3A0A0K0K1G6 114 aa13.46□□□□□ -0.26
VPS28-209ENST00000528142 C6orf99Q4VX62 202 aa13.46□□□□□ -0.26
VPS28-209ENST00000528142 NBDYA0A0U1RRE5 68 aa13.44□□□□□ -0.26
VPS28-209ENST00000528142 BAALC-AS2P0C853 105 aa13.44□□□□□ -0.26
VPS28-209ENST00000528142 M0R378 163 aa13.43□□□□□ -0.26
VPS28-209ENST00000528142 VPS25Q9BRG1 176 aa13.43□□□□□ -0.26
VPS28-209ENST00000528142 TEX49A0A1B0GTD5 131 aa13.43□□□□□ -0.26
VPS28-209ENST00000528142 TTC32Q5I0X7 151 aa13.43□□□□□ -0.26
VPS28-209ENST00000528142 C22orf24Q9Y442 160 aa13.43□□□□□ -0.26
VPS28-209ENST00000528142 A0A1B0GX51 115 aa13.41□□□□□ -0.26
VPS28-209ENST00000528142 PSCAO43653 123 aa13.41□□□□□ -0.26
VPS28-209ENST00000528142 DNAL4O96015 105 aa13.41□□□□□ -0.26
VPS28-209ENST00000528142 TRAV23DV6A0A075B6W5 121 aa13.39□□□□□ -0.27
VPS28-209ENST00000528142 LINC00167Q96N53 147 aa13.39□□□□□ -0.27
VPS28-209ENST00000528142 PLA2G2DQ9UNK4 145 aa13.39□□□□□ -0.27
VPS28-209ENST00000528142 Q8N814 137 aa13.39□□□□□ -0.27
VPS28-209ENST00000528142 SERTAD4-AS1Q5TG53 156 aa13.38□□□□□ -0.27
VPS28-209ENST00000528142 CNBPP62633 177 aaKnown RBP13.37□□□□□ -0.27
VPS28-209ENST00000528142 LINC00575Q6W349 94 aa13.37□□□□□ -0.27
VPS28-209ENST00000528142 VPS13DQ5THJ4 4388 aa13.36□□□□□ -0.27
VPS28-209ENST00000528142 LOC107984640A0A0U1RRK4 108 aa13.36□□□□□ -0.27
VPS28-209ENST00000528142 ZNF73O43830 326 aaPredicted RBP13.35□□□□□ -0.27
VPS28-209ENST00000528142 Q6ZRN7 208 aaPredicted RBP13.35□□□□□ -0.27
VPS28-209ENST00000528142 DIRC1Q969H9 104 aa13.35□□□□□ -0.27
VPS28-209ENST00000528142 WWC2-AS2Q96NR7 200 aa13.35□□□□□ -0.27
VPS28-209ENST00000528142 GAGE2BQ13066 116 aa13.34□□□□□ -0.27
VPS28-209ENST00000528142 IGLV5-37A0A075B6J1 123 aa13.34□□□□□ -0.27
VPS28-209ENST00000528142 C14orf177Q52M58 125 aa13.34□□□□□ -0.27
VPS28-209ENST00000528142 LRCOL1A6NCL2 159 aa13.33□□□□□ -0.28
VPS28-209ENST00000528142 KRTAP7-1Q8IUC3 87 aa13.32□□□□□ -0.28
VPS28-209ENST00000528142 NKAPP1Q8N9T2 125 aa13.32□□□□□ -0.28
VPS28-209ENST00000528142 ORMDL1Q9P0S3 153 aa13.32□□□□□ -0.28
VPS28-209ENST00000528142 TRBV7-6A0A0J9YX20 115 aa13.32□□□□□ -0.28
VPS28-209ENST00000528142 FAM168BA1KXE4 195 aa13.32□□□□□ -0.28
VPS28-209ENST00000528142 C7orf33Q8WU49 177 aa13.32□□□□□ -0.28
VPS28-209ENST00000528142 CBY1Q9Y3M2 126 aa13.31□□□□□ -0.28
VPS28-209ENST00000528142 hADV29S1A0JD25 119 aa13.29□□□□□ -0.28
VPS28-209ENST00000528142 SNCGO76070 127 aa13.29□□□□□ -0.28
VPS28-209ENST00000528142 ELOF1P60002 83 aaKnown RBP13.29□□□□□ -0.28
VPS28-209ENST00000528142 CDIP1Q9H305 208 aa13.29□□□□□ -0.28
VPS28-209ENST00000528142 KCNQ1DNQ9H478 68 aa13.29□□□□□ -0.28
VPS28-209ENST00000528142 M0R2N4 97 aa13.28□□□□□ -0.28
VPS28-209ENST00000528142 COX7BP24311 80 aa13.28□□□□□ -0.28
VPS28-209ENST00000528142 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.27□□□□□ -0.29
VPS28-209ENST00000528142 OBSCN-AS1Q96MR7 158 aa13.27□□□□□ -0.29
VPS28-209ENST00000528142 C16orf90A8MZG2 172 aa13.25□□□□□ -0.29
VPS28-209ENST00000528142 A0A096LNI7 61 aa13.25□□□□□ -0.29
VPS28-209ENST00000528142 Q6ZR54 194 aa13.25□□□□□ -0.29
VPS28-209ENST00000528142 DNAH10Q8IVF4 4471 aa13.24□□□□□ -0.29
VPS28-209ENST00000528142 TMEM256-PLSCR3K7ERE1 68 aa13.23□□□□□ -0.29
VPS28-209ENST00000528142 LINC00528Q8N1L1 170 aa13.23□□□□□ -0.29
VPS28-209ENST00000528142 IGLV1-50A0A075B6I6 118 aa13.23□□□□□ -0.29
VPS28-209ENST00000528142 FAM19A5Q7Z5A7 132 aaPredicted RBP13.23□□□□□ -0.29
VPS28-209ENST00000528142 INAFM2P0DMQ5 153 aa13.22□□□□□ -0.29
VPS28-209ENST00000528142 C9orf163Q8N9P6 203 aa13.21□□□□□ -0.29
VPS28-209ENST00000528142 RPL37AP8A6NKH3 93 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 168.4 ms