RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 RETNLBQ9BQ08 111 aa6.66□□□□□ -1.34
SNX1-202ENST00000380285 SPAG11AQ6PDA7 123 aa6.66□□□□□ -1.34
SNX1-202ENST00000380285 IGLV5-52A0A0A0MRZ9 124 aa6.66□□□□□ -1.34
SNX1-202ENST00000380285 PIEZO1Q92508 2521 aa6.65□□□□□ -1.34
SNX1-202ENST00000380285 FAM218AQ96MZ4 157 aa6.65□□□□□ -1.34
SNX1-202ENST00000380285 CYP4F30PQ9H0H9 118 aa6.65□□□□□ -1.34
SNX1-202ENST00000380285 A8MTW9 85 aa6.65□□□□□ -1.34
SNX1-202ENST00000380285 SMCR5Q8TEV8 140 aa6.65□□□□□ -1.34
SNX1-202ENST00000380285 CDSNQ15517 529 aa6.65□□□□□ -1.35
SNX1-202ENST00000380285 PLA2G2AP14555 144 aa6.65□□□□□ -1.35
SNX1-202ENST00000380285 GVQW2A0A096LPI5 108 aaPredicted RBP6.64□□□□□ -1.35
SNX1-202ENST00000380285 IGF2RP11717 2491 aa6.64□□□□□ -1.35
SNX1-202ENST00000380285 LY6G6CO95867 125 aa6.64□□□□□ -1.35
SNX1-202ENST00000380285 TRAV22A0A0B4J277 110 aa6.64□□□□□ -1.35
SNX1-202ENST00000380285 FN1P02751 2386 aaKnown RBP6.63□□□□□ -1.35
SNX1-202ENST00000380285 Q6ZRX8 168 aa6.62□□□□□ -1.35
SNX1-202ENST00000380285 ABCA12Q86UK0 2595 aa6.62□□□□□ -1.35
SNX1-202ENST00000380285 TRBV7-4A0A0J9YYF1 115 aa6.62□□□□□ -1.35
SNX1-202ENST00000380285 C6orf48Q9UBA6 75 aa6.62□□□□□ -1.35
SNX1-202ENST00000380285 C8orf87E5RJ46 101 aa6.62□□□□□ -1.35
SNX1-202ENST00000380285 NHLRC4P0CG21 123 aaPredicted RBP6.61□□□□□ -1.35
SNX1-202ENST00000380285 ZFYVE26Q68DK2 2539 aa6.61□□□□□ -1.35
SNX1-202ENST00000380285 PLA2G1BP04054 148 aaKnown RBP6.61□□□□□ -1.35
SNX1-202ENST00000380285 C7orf65Q6ZTY9 151 aa6.61□□□□□ -1.35
SNX1-202ENST00000380285 PRLHP81277 87 aa6.61□□□□□ -1.35
SNX1-202ENST00000380285 MOBPQ13875 183 aa6.61□□□□□ -1.35
SNX1-202ENST00000380285 LITAFQ99732 161 aa6.61□□□□□ -1.35
SNX1-202ENST00000380285 TLN2Q9Y4G6 2542 aa6.61□□□□□ -1.35
SNX1-202ENST00000380285 USP9XQ93008 2570 aaPredicted RBP6.61□□□□□ -1.35
SNX1-202ENST00000380285 DEFB116Q30KQ4 102 aa6.6□□□□□ -1.35
SNX1-202ENST00000380285 LINC00167Q96N53 147 aa6.6□□□□□ -1.35
SNX1-202ENST00000380285 KLKP1Q107X0 134 aa6.59□□□□□ -1.35
SNX1-202ENST00000380285 COL4A2P08572 1712 aa6.59□□□□□ -1.35
SNX1-202ENST00000380285 IGLV6-57P01721 117 aa6.59□□□□□ -1.35
SNX1-202ENST00000380285 LOC101927531A0A1B0GV80 90 aa6.59□□□□□ -1.36
SNX1-202ENST00000380285 FHL3Q13643 280 aa6.59□□□□□ -1.36
SNX1-202ENST00000380285 TM2D3Q9BRN9 247 aa6.58□□□□□ -1.36
SNX1-202ENST00000380285 WIPF1O43516 503 aa6.58□□□□□ -1.36
SNX1-202ENST00000380285 CENPFP49454 3210 aa6.58□□□□□ -1.36
SNX1-202ENST00000380285 A0A1W2PPR1 153 aa6.58□□□□□ -1.36
SNX1-202ENST00000380285 LINC00476Q8WZB0 136 aa6.57□□□□□ -1.36
SNX1-202ENST00000380285 SPINT4Q6UDR6 99 aa6.57□□□□□ -1.36
SNX1-202ENST00000380285 C1orf134Q5TEV5 83 aa6.56□□□□□ -1.36
SNX1-202ENST00000380285 IGKV2D-30A0A075B6S6 120 aa6.55□□□□□ -1.36
SNX1-202ENST00000380285 IGKV2-30P06310 120 aa6.55□□□□□ -1.36
SNX1-202ENST00000380285 A8MWP4 228 aa6.55□□□□□ -1.36
SNX1-202ENST00000380285 C16orf90A8MZG2 172 aa6.54□□□□□ -1.36
SNX1-202ENST00000380285 FSHBP01225 129 aa6.54□□□□□ -1.36
SNX1-202ENST00000380285 ACANP16112 2415 aa6.53□□□□□ -1.36
SNX1-202ENST00000380285 ATP11AUNQ6ZP68 121 aa6.53□□□□□ -1.36
SNX1-202ENST00000380285 Q9UF83 564 aa6.53□□□□□ -1.36
SNX1-202ENST00000380285 PKD1L2Q7Z442 2459 aa6.53□□□□□ -1.36
SNX1-202ENST00000380285 ANKRD17O75179 2603 aaKnown RBP6.52□□□□□ -1.36
SNX1-202ENST00000380285 ANKRD11Q6UB99 2663 aaPredicted RBP6.52□□□□□ -1.37
SNX1-202ENST00000380285 LINC00313P59037 77 aa6.52□□□□□ -1.37
SNX1-202ENST00000380285 NCOR2Q9Y618 2525 aa6.51□□□□□ -1.37
SNX1-202ENST00000380285 FAM229AH3BQW9 127 aa6.51□□□□□ -1.37
SNX1-202ENST00000380285 USP9YO00507 2555 aaPredicted RBP6.51□□□□□ -1.37
SNX1-202ENST00000380285 SETD2Q9BYW2 2564 aaPredicted RBP6.51□□□□□ -1.37
SNX1-202ENST00000380285 Q6ZRP5 223 aa6.51□□□□□ -1.37
SNX1-202ENST00000380285 KRTAP10-9P60411 292 aa6.5□□□□□ -1.37
SNX1-202ENST00000380285 KCNQ1DNQ9H478 68 aa6.49□□□□□ -1.37
SNX1-202ENST00000380285 KTN1-AS1Q86SY8 53 aa6.49□□□□□ -1.37
SNX1-202ENST00000380285 COA5Q86WW8 74 aa6.48□□□□□ -1.37
SNX1-202ENST00000380285 UQCR11O14957 56 aa6.48□□□□□ -1.37
SNX1-202ENST00000380285 EPM2AB3EWF7 344 aa6.48□□□□□ -1.37
SNX1-202ENST00000380285 F8P00451 2351 aa6.47□□□□□ -1.37
SNX1-202ENST00000380285 JMJD1CQ15652 2540 aa6.47□□□□□ -1.37
SNX1-202ENST00000380285 DNAH10OSP0CZ25 163 aa6.47□□□□□ -1.37
SNX1-202ENST00000380285 LCA10Q71F78 164 aa6.47□□□□□ -1.37
SNX1-202ENST00000380285 RPL37AP61513 92 aaKnown RBP6.47□□□□□ -1.37
SNX1-202ENST00000380285 LINC01600Q96MT4 127 aa6.47□□□□□ -1.37
SNX1-202ENST00000380285 LINC00528Q8N1L1 170 aa6.46□□□□□ -1.37
SNX1-202ENST00000380285 MRPL34Q9BQ48 92 aaKnown RBP6.46□□□□□ -1.37
SNX1-202ENST00000380285 H7BZZ5 65 aa6.46□□□□□ -1.38
SNX1-202ENST00000380285 SPANXA2-OT1Q8N9U9 137 aa6.45□□□□□ -1.38
SNX1-202ENST00000380285 Q8NAQ8 132 aa6.45□□□□□ -1.38
SNX1-202ENST00000380285 K7EQZ3 153 aa6.45□□□□□ -1.38
SNX1-202ENST00000380285 SMR3AQ99954 134 aa6.45□□□□□ -1.38
SNX1-202ENST00000380285 PLA2G2DQ9UNK4 145 aa6.44□□□□□ -1.38
SNX1-202ENST00000380285 IGLV8-61A0A075B6I0 122 aa6.44□□□□□ -1.38
SNX1-202ENST00000380285 PRR15Q8IV56 129 aa6.44□□□□□ -1.38
SNX1-202ENST00000380285 CEP350Q5VT06 3117 aa6.43□□□□□ -1.38
SNX1-202ENST00000380285 A8MUN3 132 aa6.43□□□□□ -1.38
SNX1-202ENST00000380285 IGLV1-50A0A075B6I6 118 aa6.43□□□□□ -1.38
SNX1-202ENST00000380285 SSBP3-AS1Q7Z2R9 100 aa6.42□□□□□ -1.38
SNX1-202ENST00000380285 SPACA4Q8TDM5 124 aa6.42□□□□□ -1.38
SNX1-202ENST00000380285 ZNF462Q96JM2 2506 aa6.42□□□□□ -1.38
SNX1-202ENST00000380285 ST20-AS1Q8NBB2 130 aa6.42□□□□□ -1.38
SNX1-202ENST00000380285 LINC00336Q6ZUF6 198 aa6.41□□□□□ -1.38
SNX1-202ENST00000380285 PHF5AQ7RTV0 110 aaKnown RBP6.41□□□□□ -1.38
SNX1-202ENST00000380285 PRR34Q9NV39 138 aa6.41□□□□□ -1.38
SNX1-202ENST00000380285 A0A0C4DFX4 3053 aa6.41□□□□□ -1.38
SNX1-202ENST00000380285 TLX1NBP0CAT3 122 aa6.4□□□□□ -1.39
SNX1-202ENST00000380285 CSNK1G2-AS1Q8NCQ2 148 aa6.39□□□□□ -1.39
SNX1-202ENST00000380285 NBDYA0A0U1RRE5 68 aa6.39□□□□□ -1.39
SNX1-202ENST00000380285 MIR22HGQ0VDD5 57 aa6.38□□□□□ -1.39
SNX1-202ENST00000380285 OBSCN-AS1Q96MR7 158 aa6.38□□□□□ -1.39
SNX1-202ENST00000380285 UTRNP46939 3433 aa6.38□□□□□ -1.39
SNX1-202ENST00000380285 LINC00588Q9Y4M8 146 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms