RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ZNF625Q96I27 306 aaPredicted RBP11.8□□□□□ -0.52
HMGA1-201ENST00000311487 EPPK1P58107 5090 aaKnown RBP11.8□□□□□ -0.52
HMGA1-201ENST00000311487 PRSS2P07478 247 aa11.8□□□□□ -0.52
HMGA1-201ENST00000311487 C14orf177Q52M58 125 aa11.8□□□□□ -0.52
HMGA1-201ENST00000311487 CAMK2N2Q96S95 79 aa11.8□□□□□ -0.52
HMGA1-201ENST00000311487 Q6ZRU5 148 aa11.79□□□□□ -0.52
HMGA1-201ENST00000311487 COX7B2Q8TF08 81 aa11.79□□□□□ -0.52
HMGA1-201ENST00000311487 A0A0B4J2C4 111 aa11.78□□□□□ -0.52
HMGA1-201ENST00000311487 PRO1854Q9UHT4 67 aa11.78□□□□□ -0.52
HMGA1-201ENST00000311487 DNAH5Q8TE73 4624 aa11.77□□□□□ -0.53
HMGA1-201ENST00000311487 C9orf116Q5BN46 136 aaPredicted RBP11.77□□□□□ -0.53
HMGA1-201ENST00000311487 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.76□□□□□ -0.53
HMGA1-201ENST00000311487 SYCNQ0VAF6 134 aa11.76□□□□□ -0.53
HMGA1-201ENST00000311487 NPC2P61916 151 aa11.76□□□□□ -0.53
HMGA1-201ENST00000311487 HERV-K104P63124 156 aa11.76□□□□□ -0.53
HMGA1-201ENST00000311487 CIRBPQ14011 172 aaKnown RBP11.76□□□□□ -0.53
HMGA1-201ENST00000311487 LINC01561Q8N1V8 128 aa11.76□□□□□ -0.53
HMGA1-201ENST00000311487 DAND5Q8N907 189 aa11.76□□□□□ -0.53
HMGA1-201ENST00000311487 Q8IZM0 81 aa11.75□□□□□ -0.53
HMGA1-201ENST00000311487 IFITM1P13164 125 aa11.74□□□□□ -0.53
HMGA1-201ENST00000311487 CARD19Q96LW7 228 aa11.74□□□□□ -0.53
HMGA1-201ENST00000311487 C16orf90A8MZG2 172 aa11.73□□□□□ -0.53
HMGA1-201ENST00000311487 CNBPP62633 177 aaKnown RBP11.73□□□□□ -0.53
HMGA1-201ENST00000311487 C6orf48Q9UBA6 75 aa11.73□□□□□ -0.53
HMGA1-201ENST00000311487 MEIG1Q5JSS6 88 aa11.72□□□□□ -0.53
HMGA1-201ENST00000311487 SFTA2Q6UW10 78 aa11.72□□□□□ -0.53
HMGA1-201ENST00000311487 A0A0U1RRA0 63 aa11.72□□□□□ -0.53
HMGA1-201ENST00000311487 C2orf48Q96LS8 159 aa11.72□□□□□ -0.53
HMGA1-201ENST00000311487 LOC107984156A0A0G2JMH3 177 aa11.71□□□□□ -0.53
HMGA1-201ENST00000311487 KRTAP10-1P60331 282 aa11.71□□□□□ -0.53
HMGA1-201ENST00000311487 ARL17AQ8IVW1 177 aa11.71□□□□□ -0.53
HMGA1-201ENST00000311487 LINC00308Q8TCZ7 52 aa11.71□□□□□ -0.53
HMGA1-201ENST00000311487 H3BMG7 143 aa11.7□□□□□ -0.54
HMGA1-201ENST00000311487 HAMPP81172 84 aa11.7□□□□□ -0.54
HMGA1-201ENST00000311487 ERG28Q9UKR5 140 aa11.7□□□□□ -0.54
HMGA1-201ENST00000311487 C9orf163Q8N9P6 203 aa11.7□□□□□ -0.54
HMGA1-201ENST00000311487 F8W1H4 67 aa11.69□□□□□ -0.54
HMGA1-201ENST00000311487 SOSTDC1Q6X4U4 206 aa11.69□□□□□ -0.54
HMGA1-201ENST00000311487 CHTF8P0CG12 524 aa11.68□□□□□ -0.54
HMGA1-201ENST00000311487 LYRM7Q5U5X0 104 aa11.68□□□□□ -0.54
HMGA1-201ENST00000311487 IGKV2-24A0A0C4DH68 120 aa11.68□□□□□ -0.54
HMGA1-201ENST00000311487 H7C2G1 150 aa11.68□□□□□ -0.54
HMGA1-201ENST00000311487 PANO1I0J062 215 aa11.67□□□□□ -0.54
HMGA1-201ENST00000311487 PFN2P35080 140 aa11.67□□□□□ -0.54
HMGA1-201ENST00000311487 FAM30AQ9NZY2 134 aa11.67□□□□□ -0.54
HMGA1-201ENST00000311487 RPL18AQ02543 176 aaKnown RBP11.66□□□□□ -0.54
HMGA1-201ENST00000311487 SDIM1Q6ZPB5 146 aa11.66□□□□□ -0.54
HMGA1-201ENST00000311487 PSMB2P49721 201 aa11.66□□□□□ -0.54
HMGA1-201ENST00000311487 GAGE2BQ13066 116 aa11.66□□□□□ -0.54
HMGA1-201ENST00000311487 GAGE2EQ4V326 116 aa11.66□□□□□ -0.54
HMGA1-201ENST00000311487 GAGE2DQ9UEU5 116 aa11.66□□□□□ -0.54
HMGA1-201ENST00000311487 Q1RN00 199 aa11.65□□□□□ -0.54
HMGA1-201ENST00000311487 COPS9Q8WXC6 57 aa11.65□□□□□ -0.54
HMGA1-201ENST00000311487 PRO0461Q9UI25 63 aa11.65□□□□□ -0.54
HMGA1-201ENST00000311487 TCL1BO95988 128 aa11.64□□□□□ -0.55
HMGA1-201ENST00000311487 PPDPFQ9H3Y8 114 aa11.64□□□□□ -0.55
HMGA1-201ENST00000311487 LRP1BQ9NZR2 4599 aa11.64□□□□□ -0.55
HMGA1-201ENST00000311487 A0A096LNI7 61 aa11.64□□□□□ -0.55
HMGA1-201ENST00000311487 CXCL5P42830 114 aa11.64□□□□□ -0.55
HMGA1-201ENST00000311487 Q6ZRP5 223 aa11.64□□□□□ -0.55
HMGA1-201ENST00000311487 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.64□□□□□ -0.55
HMGA1-201ENST00000311487 DYNC1H1Q14204 4646 aaKnown RBP11.64□□□□□ -0.55
HMGA1-201ENST00000311487 SCGB1C2P0DMR2 95 aa11.63□□□□□ -0.55
HMGA1-201ENST00000311487 TRBV20-1A0A075B6N2 111 aa11.62□□□□□ -0.55
HMGA1-201ENST00000311487 TRBV30A0A0K0K1B3 111 aa11.62□□□□□ -0.55
HMGA1-201ENST00000311487 MIR7-3HGQ8N6C7 128 aa11.62□□□□□ -0.55
HMGA1-201ENST00000311487 DPH3Q96FX2 82 aa11.62□□□□□ -0.55
HMGA1-201ENST00000311487 RPL13AP40429 203 aaKnown RBP11.62□□□□□ -0.55
HMGA1-201ENST00000311487 XAGE1AQ9HD64 81 aa11.61□□□□□ -0.55
HMGA1-201ENST00000311487 TRIAP1O43715 76 aa11.6□□□□□ -0.55
HMGA1-201ENST00000311487 LINC00158P58513 81 aa11.6□□□□□ -0.55
HMGA1-201ENST00000311487 LOC107984640A0A0U1RRK4 108 aa11.6□□□□□ -0.55
HMGA1-201ENST00000311487 F8WDY8 70 aa11.6□□□□□ -0.55
HMGA1-201ENST00000311487 SS18L2Q9UHA2 77 aa11.58□□□□□ -0.55
HMGA1-201ENST00000311487 NDUFC2-KCTD14E9PQ53 114 aa11.58□□□□□ -0.56
HMGA1-201ENST00000311487 FAM168BA1KXE4 195 aa11.57□□□□□ -0.56
HMGA1-201ENST00000311487 SMCPP49901 116 aaPredicted RBP11.57□□□□□ -0.56
HMGA1-201ENST00000311487 C9orf129Q5T035 196 aaKnown RBP11.54□□□□□ -0.56
HMGA1-201ENST00000311487 SND1-IT1Q9HBX3 110 aa11.54□□□□□ -0.56
HMGA1-201ENST00000311487 ETDBQ3ZM63 59 aa11.54□□□□□ -0.56
HMGA1-201ENST00000311487 TLX1NBP0CAT3 122 aa11.53□□□□□ -0.56
HMGA1-201ENST00000311487 ATXN8Q156A1 80 aa11.53□□□□□ -0.56
HMGA1-201ENST00000311487 SPACA4Q8TDM5 124 aa11.53□□□□□ -0.56
HMGA1-201ENST00000311487 ANAPC13Q9BS18 74 aa11.53□□□□□ -0.56
HMGA1-201ENST00000311487 IGKV2-28A0A075B6P5 120 aa11.52□□□□□ -0.56
HMGA1-201ENST00000311487 IGKV2D-28P01615 120 aa11.52□□□□□ -0.56
HMGA1-201ENST00000311487 COX6CP09669 75 aa11.52□□□□□ -0.56
HMGA1-201ENST00000311487 A0A087WYN8 130 aa11.52□□□□□ -0.57
HMGA1-201ENST00000311487 A0A1W2PNN7 141 aa11.52□□□□□ -0.57
HMGA1-201ENST00000311487 SCXQ7RTU7 201 aa11.52□□□□□ -0.57
HMGA1-201ENST00000311487 CIRBP-AS1Q8TBR5 109 aa11.52□□□□□ -0.57
HMGA1-201ENST00000311487 XGP55808 180 aa11.51□□□□□ -0.57
HMGA1-201ENST00000311487 Q6ZSA8 131 aa11.51□□□□□ -0.57
HMGA1-201ENST00000311487 FAM19A5Q7Z5A7 132 aaPredicted RBP11.5□□□□□ -0.57
HMGA1-201ENST00000311487 LINC00337Q8N6G1 96 aa11.5□□□□□ -0.57
HMGA1-201ENST00000311487 CDIP1Q9H305 208 aa11.5□□□□□ -0.57
HMGA1-201ENST00000311487 TRAV13-2A0A0B4J235 113 aa11.5□□□□□ -0.57
HMGA1-201ENST00000311487 COX17Q14061 63 aa11.5□□□□□ -0.57
HMGA1-201ENST00000311487 C9JAW5 83 aa11.49□□□□□ -0.57
HMGA1-201ENST00000311487 CLEC2BQ92478 149 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms