RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 USP17L23D6RBM5 183 aa8.75□□□□□ -1.01
LIG1-201ENST00000263274 STAB1Q9NY15 2570 aa8.75□□□□□ -1.01
LIG1-201ENST00000263274 REG3AQ06141 175 aa8.74□□□□□ -1.01
LIG1-201ENST00000263274 C6orf99Q4VX62 202 aa8.74□□□□□ -1.01
LIG1-201ENST00000263274 Q5XG85 94 aa8.74□□□□□ -1.01
LIG1-201ENST00000263274 C6orf223Q8N319 242 aa8.73□□□□□ -1.01
LIG1-201ENST00000263274 LAMTOR3Q9UHA4 124 aa8.73□□□□□ -1.01
LIG1-201ENST00000263274 C1orf195Q5TG92 126 aa8.73□□□□□ -1.01
LIG1-201ENST00000263274 KLK12Q9UKR0 248 aa8.73□□□□□ -1.01
LIG1-201ENST00000263274 TRAV23DV6A0A075B6W5 121 aa8.72□□□□□ -1.01
LIG1-201ENST00000263274 SPATA3Q8NHX4 192 aa8.72□□□□□ -1.01
LIG1-201ENST00000263274 Q8IZM0 81 aa8.72□□□□□ -1.01
LIG1-201ENST00000263274 NBEAL1Q6ZS30 2694 aa8.72□□□□□ -1.01
LIG1-201ENST00000263274 C20orf197Q8N268 126 aa8.72□□□□□ -1.01
LIG1-201ENST00000263274 UNQ6190/PRO20217Q6UXQ8 127 aa8.71□□□□□ -1.01
LIG1-201ENST00000263274 X6R8D5 127 aa8.71□□□□□ -1.02
LIG1-201ENST00000263274 INAFM1C9JVW0 142 aa8.7□□□□□ -1.02
LIG1-201ENST00000263274 HILS1P60008 231 aa8.7□□□□□ -1.02
LIG1-201ENST00000263274 XAGE1AQ9HD64 81 aa8.7□□□□□ -1.02
LIG1-201ENST00000263274 GHRHP01286 108 aa8.7□□□□□ -1.02
LIG1-201ENST00000263274 CD164L2Q6UWJ8 174 aa8.7□□□□□ -1.02
LIG1-201ENST00000263274 SPAG11BQ08648 103 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 IGHV4-28A0A0C4DH34 117 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 LY6G6DO95868 133 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 C10orf25Q5T742 122 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 Q8N814 137 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 C16orf95Q9H693 158 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 A0A1B0GUV1 79 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 KRTAP10-3P60369 221 aa8.69□□□□□ -1.02
LIG1-201ENST00000263274 NOTCH1P46531 2555 aa8.68□□□□□ -1.02
LIG1-201ENST00000263274 KRTAP1-1Q07627 177 aa8.68□□□□□ -1.02
LIG1-201ENST00000263274 LINC01561Q8N1V8 128 aa8.68□□□□□ -1.02
LIG1-201ENST00000263274 CELA1Q9UNI1 258 aa8.67□□□□□ -1.02
LIG1-201ENST00000263274 HAMPP81172 84 aa8.67□□□□□ -1.02
LIG1-201ENST00000263274 TMEM256-PLSCR3K7ERE1 68 aa8.66□□□□□ -1.02
LIG1-201ENST00000263274 ENHOQ6UWT2 76 aa8.66□□□□□ -1.02
LIG1-201ENST00000263274 Q6JHZ5 121 aa8.65□□□□□ -1.02
LIG1-201ENST00000263274 UPK3BQ9BT76 320 aa8.65□□□□□ -1.02
LIG1-201ENST00000263274 CCKP06307 115 aa8.65□□□□□ -1.03
LIG1-201ENST00000263274 HIGD2BQ4VC39 106 aa8.65□□□□□ -1.03
LIG1-201ENST00000263274 FAM19A1Q7Z5A9 133 aa8.65□□□□□ -1.03
LIG1-201ENST00000263274 UBL5Q9BZL1 73 aa8.65□□□□□ -1.03
LIG1-201ENST00000263274 JMJD7-PLA2G4BH0Y9G9 81 aa8.64□□□□□ -1.03
LIG1-201ENST00000263274 NANOS2P60321 138 aaKnown RBP8.64□□□□□ -1.03
LIG1-201ENST00000263274 KIAA0087Q14695 138 aa8.64□□□□□ -1.03
LIG1-201ENST00000263274 TENM1Q9UKZ4 2725 aa8.64□□□□□ -1.03
LIG1-201ENST00000263274 LYRM9A8MSI8 78 aa8.63□□□□□ -1.03
LIG1-201ENST00000263274 Q8NDZ9 215 aa8.63□□□□□ -1.03
LIG1-201ENST00000263274 APOC4P55056 127 aa8.62□□□□□ -1.03
LIG1-201ENST00000263274 RBM3P98179 157 aaKnown RBP8.62□□□□□ -1.03
LIG1-201ENST00000263274 C9orf66Q5T8R8 295 aa8.62□□□□□ -1.03
LIG1-201ENST00000263274 Q6ZQY7 126 aa8.62□□□□□ -1.03
LIG1-201ENST00000263274 BRK1Q8WUW1 75 aa8.62□□□□□ -1.03
LIG1-201ENST00000263274 SPART-AS1P0CW21 52 aa8.61□□□□□ -1.03
LIG1-201ENST00000263274 ZNF561-AS1K7EIQ3 104 aa8.6□□□□□ -1.03
LIG1-201ENST00000263274 SCXQ7RTU7 201 aa8.6□□□□□ -1.03
LIG1-201ENST00000263274 SNURFQ9Y675 71 aa8.6□□□□□ -1.03
LIG1-201ENST00000263274 COX17Q14061 63 aa8.59□□□□□ -1.03
LIG1-201ENST00000263274 MGAM2Q2M2H8 2515 aa8.59□□□□□ -1.03
LIG1-201ENST00000263274 NDUFC2O95298 119 aa8.59□□□□□ -1.03
LIG1-201ENST00000263274 TRBV10-3A0A0K0K1G6 114 aa8.59□□□□□ -1.03
LIG1-201ENST00000263274 LINC00612Q8N6U2 182 aa8.59□□□□□ -1.03
LIG1-201ENST00000263274 LINC00575Q6W349 94 aa8.58□□□□□ -1.04
LIG1-201ENST00000263274 FBN1P35555 2871 aaKnown RBP8.58□□□□□ -1.04
LIG1-201ENST00000263274 OBSCN-AS1Q96MR7 158 aa8.58□□□□□ -1.04
LIG1-201ENST00000263274 CAMK2N2Q96S95 79 aa8.58□□□□□ -1.04
LIG1-201ENST00000263274 M0R2N4 97 aa8.57□□□□□ -1.04
LIG1-201ENST00000263274 C4orf48Q5BLP8 95 aa8.57□□□□□ -1.04
LIG1-201ENST00000263274 TRRAPQ9Y4A5 3859 aa8.56□□□□□ -1.04
LIG1-201ENST00000263274 LELP1Q5T871 98 aa8.56□□□□□ -1.04
LIG1-201ENST00000263274 DIRC1Q969H9 104 aa8.55□□□□□ -1.04
LIG1-201ENST00000263274 IGHV4-30-4P0DP06 118 aa8.55□□□□□ -1.04
LIG1-201ENST00000263274 WFDC10BQ8IUB3 73 aa8.54□□□□□ -1.04
LIG1-201ENST00000263274 MIFP14174 115 aa8.53□□□□□ -1.04
LIG1-201ENST00000263274 Q8NAQ8 132 aa8.53□□□□□ -1.04
LIG1-201ENST00000263274 DEFB105AQ8NG35 78 aa8.53□□□□□ -1.04
LIG1-201ENST00000263274 C6orf48Q9UBA6 75 aa8.53□□□□□ -1.04
LIG1-201ENST00000263274 SERP1Q9Y6X1 66 aa8.53□□□□□ -1.04
LIG1-201ENST00000263274 PKD1L1Q8TDX9 2849 aa8.53□□□□□ -1.04
LIG1-201ENST00000263274 RMI2Q96E14 147 aa8.52□□□□□ -1.05
LIG1-201ENST00000263274 IGKV2D-24A0A075B6R9 120 aa8.52□□□□□ -1.05
LIG1-201ENST00000263274 F8WEM9 126 aa8.52□□□□□ -1.05
LIG1-201ENST00000263274 OXLD1Q5BKU9 147 aa8.52□□□□□ -1.05
LIG1-201ENST00000263274 COX7BP24311 80 aa8.51□□□□□ -1.05
LIG1-201ENST00000263274 LYPD5Q6UWN5 251 aa8.51□□□□□ -1.05
LIG1-201ENST00000263274 MPLKIPQ8TAP9 179 aa8.51□□□□□ -1.05
LIG1-201ENST00000263274 NDUFC2-KCTD14E9PQ53 114 aa8.51□□□□□ -1.05
LIG1-201ENST00000263274 ZNF73O43830 326 aaPredicted RBP8.5□□□□□ -1.05
LIG1-201ENST00000263274 LINC00474Q9P2X8 69 aa8.5□□□□□ -1.05
LIG1-201ENST00000263274 KPRPQ5T749 579 aaPredicted RBP8.5□□□□□ -1.05
LIG1-201ENST00000263274 Q6ZQT0 140 aa8.5□□□□□ -1.05
LIG1-201ENST00000263274 LINC00167Q96N53 147 aa8.49□□□□□ -1.05
LIG1-201ENST00000263274 H7BZZ5 65 aa8.49□□□□□ -1.05
LIG1-201ENST00000263274 Q6ZVQ6 151 aa8.49□□□□□ -1.05
LIG1-201ENST00000263274 ANK3Q12955 4377 aaKnown RBP8.48□□□□□ -1.05
LIG1-201ENST00000263274 SMIM26A0A096LP01 95 aa8.48□□□□□ -1.05
LIG1-201ENST00000263274 LINC01547P58512 204 aaPredicted RBP8.48□□□□□ -1.05
LIG1-201ENST00000263274 Q6ZRU5 148 aa8.48□□□□□ -1.05
LIG1-201ENST00000263274 Q6ZTC4 211 aa8.47□□□□□ -1.05
LIG1-201ENST00000263274 A0A0J9YWU9 116 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms