RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 IGLV2-18A0A075B6J9 118 aa4.33□□□□□ -1.72
VPS13D-201ENST00000011700 SPATA3Q8NHX4 192 aa4.33□□□□□ -1.72
VPS13D-201ENST00000011700 PLA2G2AP14555 144 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 LRCOL1A6NCL2 159 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 UQCR11O14957 56 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 Q6ZS46 218 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 KIF25-AS1Q9Y6Z4 181 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 C1orf134Q5TEV5 83 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 DEFB4AO15263 64 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 IGLV4-60A0A075B6I1 120 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 ZNF292O60281 2723 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 PSPHP1O15172 72 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 ATP11AUNQ6ZP68 121 aa4.32□□□□□ -1.72
VPS13D-201ENST00000011700 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-201ENST00000011700 KLKP1Q107X0 134 aa4.31□□□□□ -1.72
VPS13D-201ENST00000011700 Q8NBF4 154 aa4.31□□□□□ -1.72
VPS13D-201ENST00000011700 A0A087WYN8 130 aa4.31□□□□□ -1.72
VPS13D-201ENST00000011700 FHL2Q14192 279 aa4.31□□□□□ -1.72
VPS13D-201ENST00000011700 SBSPONQ8IVN8 264 aa4.31□□□□□ -1.72
VPS13D-201ENST00000011700 A0A087WSZ3 146 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 KIAA0087Q14695 138 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 UNQ6190/PRO20217Q6UXQ8 127 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 A0A096LNI7 61 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 CRIP3Q6Q6R5 217 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 Q6ZRX8 168 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 SPANXA2-OT1Q8N9U9 137 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 IGHV4-30-4P0DP06 118 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 IGHV3OR16-9A0A0B4J2B5 98 aa4.3□□□□□ -1.72
VPS13D-201ENST00000011700 NANOS2P60321 138 aaKnown RBP4.3□□□□□ -1.72
VPS13D-201ENST00000011700 FRMD6-AS1P0C7T7 363 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 Q6ZPA2 131 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 TEP1Q99973 2627 aaKnown RBP4.29□□□□□ -1.72
VPS13D-201ENST00000011700 LINC00846Q9NV44 126 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 A0A0J9YWU9 116 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 INAFM1C9JVW0 142 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 LINC00313P59037 77 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 CD164Q04900 197 aa4.29□□□□□ -1.72
VPS13D-201ENST00000011700 C16orf90A8MZG2 172 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 C6orf223Q8N319 242 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 ODF3L2Q3SX64 289 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 EP400Q96L91 3159 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 MSMPQ1L6U9 139 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 ADAMTSL4-AS1Q5T5F5 129 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 A8MWP4 228 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 CRIPTQ9P021 101 aa4.28□□□□□ -1.72
VPS13D-201ENST00000011700 LYPD5Q6UWN5 251 aa4.27□□□□□ -1.73
VPS13D-201ENST00000011700 Q6ZQT0 140 aa4.27□□□□□ -1.73
VPS13D-201ENST00000011700 CDIP1Q9H305 208 aa4.27□□□□□ -1.73
VPS13D-201ENST00000011700 PRR9Q5T870 116 aa4.27□□□□□ -1.73
VPS13D-201ENST00000011700 Q6ZRP5 223 aa4.27□□□□□ -1.73
VPS13D-201ENST00000011700 FAM19A4Q96LR4 140 aa4.26□□□□□ -1.73
VPS13D-201ENST00000011700 C11orf21Q9P2W6 132 aa4.26□□□□□ -1.73
VPS13D-201ENST00000011700 SOSTDC1Q6X4U4 206 aa4.26□□□□□ -1.73
VPS13D-201ENST00000011700 IGLV6-57P01721 117 aa4.25□□□□□ -1.73
VPS13D-201ENST00000011700 A8MUN3 132 aa4.25□□□□□ -1.73
VPS13D-201ENST00000011700 PRR15Q8IV56 129 aa4.25□□□□□ -1.73
VPS13D-201ENST00000011700 SETXQ7Z333 2677 aaKnown RBP4.25□□□□□ -1.73
VPS13D-201ENST00000011700 LINC00310P59036 64 aa4.25□□□□□ -1.73
VPS13D-201ENST00000011700 COX6A2Q02221 97 aa4.24□□□□□ -1.73
VPS13D-201ENST00000011700 DEFB1P60022 68 aa4.24□□□□□ -1.73
VPS13D-201ENST00000011700 X6R8D5 127 aa4.24□□□□□ -1.73
VPS13D-201ENST00000011700 KLK9Q2XQG4 91 aa4.24□□□□□ -1.73
VPS13D-201ENST00000011700 NSD1Q96L73 2696 aaPredicted RBP4.24□□□□□ -1.73
VPS13D-201ENST00000011700 PRR4Q16378 134 aa4.24□□□□□ -1.73
VPS13D-201ENST00000011700 APCP25054 2843 aa4.24□□□□□ -1.73
VPS13D-201ENST00000011700 UTP20O75691 2785 aaKnown RBP4.24□□□□□ -1.73
VPS13D-201ENST00000011700 KTN1-AS1Q86SY8 53 aa4.23□□□□□ -1.73
VPS13D-201ENST00000011700 PROK1P58294 105 aa4.23□□□□□ -1.73
VPS13D-201ENST00000011700 IGKV2D-30A0A075B6S6 120 aa4.23□□□□□ -1.73
VPS13D-201ENST00000011700 IGKV2-30P06310 120 aa4.23□□□□□ -1.73
VPS13D-201ENST00000011700 LINC00336Q6ZUF6 198 aa4.23□□□□□ -1.73
VPS13D-201ENST00000011700 LUZP6Q538Z0 58 aa4.23□□□□□ -1.73
VPS13D-201ENST00000011700 A0A096LNJ9 63 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 TSPEAR-AS2P59090 65 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 DNAH10OSP0CZ25 163 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 C22orf24Q9Y442 160 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 WWC2-AS2Q96NR7 200 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 C10orf142B7Z368 130 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 SMIM29Q86T20 159 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 A0A1W2PNU3 283 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-201ENST00000011700 J3QL48 77 aa4.22□□□□□ -1.73
VPS13D-201ENST00000011700 URB1-AS1Q96HZ7 61 aa4.21□□□□□ -1.73
VPS13D-201ENST00000011700 A0A087WVE0 104 aa4.21□□□□□ -1.74
VPS13D-201ENST00000011700 PLA2G2DQ9UNK4 145 aa4.21□□□□□ -1.74
VPS13D-201ENST00000011700 C9orf116Q5BN46 136 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-201ENST00000011700 SPINT4Q6UDR6 99 aa4.21□□□□□ -1.74
VPS13D-201ENST00000011700 PRLHP81277 87 aa4.2□□□□□ -1.74
VPS13D-201ENST00000011700 SSBP3-AS1Q7Z2R9 100 aa4.2□□□□□ -1.74
VPS13D-201ENST00000011700 PRO0461Q9UI25 63 aa4.2□□□□□ -1.74
VPS13D-201ENST00000011700 PCOTHQ58A44 107 aa4.2□□□□□ -1.74
VPS13D-201ENST00000011700 SMCR5Q8TEV8 140 aa4.2□□□□□ -1.74
VPS13D-201ENST00000011700 KCNQ1DNQ9H478 68 aa4.19□□□□□ -1.74
VPS13D-201ENST00000011700 MDFIQ99750 246 aa4.19□□□□□ -1.74
VPS13D-201ENST00000011700 LINC00476Q8WZB0 136 aa4.19□□□□□ -1.74
VPS13D-201ENST00000011700 LINC01600Q96MT4 127 aa4.19□□□□□ -1.74
VPS13D-201ENST00000011700 Q6ZRU5 148 aa4.19□□□□□ -1.74
VPS13D-201ENST00000011700 EPM2AB3EWF7 344 aa4.18□□□□□ -1.74
VPS13D-201ENST00000011700 WIPF1O43516 503 aa4.18□□□□□ -1.74
VPS13D-201ENST00000011700 MRPL34Q9BQ48 92 aaKnown RBP4.18□□□□□ -1.74
VPS13D-201ENST00000011700 MIR22HGQ0VDD5 57 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms