RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 MSMBP08118 114 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 SPINK7P58062 85 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 COX17Q14061 63 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 ESPL1Q14674 2120 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 C14orf177Q52M58 125 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 LCE1FQ5T754 118 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 SPATA8Q6RVD6 105 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 LINC00612Q8N6U2 182 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 CNEP1R1Q8N9A8 125 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 NPBQ8NG41 125 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 UNC13CQ8NB66 2214 aa2.73□□□□□ -1.97
VPS39-212ENST00000570023 PRRC2AP48634 2157 aaKnown RBP2.73□□□□□ -1.97
VPS39-212ENST00000570023 A0A087WSZ3 146 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 TRGV4A0A0C4DH28 118 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 SPTY2D1-AS1A0A0U1RR47 76 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 IGLV1-47P01700 117 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 REG3AQ06141 175 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 CSAG1Q6PB30 78 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 ADM2Q7Z4H4 148 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 KRTAP7-1Q8IUC3 87 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 C9orf163Q8N9P6 203 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 TTTY12Q9BZ98 90 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 USF3Q68DE3 2245 aa2.72□□□□□ -1.97
VPS39-212ENST00000570023 SPAG17Q6Q759 2223 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 IGLV1-44P01699 117 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 IGHV1-46P01743 117 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 IGHV3-23P01764 117 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 IGHV1-2P23083 117 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 MIR22HGQ0VDD5 57 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 PRR4Q16378 134 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 DEFB112Q30KQ8 113 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 REG3GQ6UW15 175 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 Q8NDZ9 215 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 DSCAML1Q8TD84 2053 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 PCNX2A6NKB5 2137 aa2.71□□□□□ -1.98
VPS39-212ENST00000570023 FREM1Q5H8C1 2179 aa2.7□□□□□ -1.98
VPS39-212ENST00000570023 APELAP0DMC3 54 aa2.7□□□□□ -1.98
VPS39-212ENST00000570023 Q6ZQY7 126 aa2.7□□□□□ -1.98
VPS39-212ENST00000570023 Q6ZR54 194 aa2.7□□□□□ -1.98
VPS39-212ENST00000570023 ST20-AS1Q8NBB2 130 aa2.7□□□□□ -1.98
VPS39-212ENST00000570023 ZNRD1Q9P1U0 126 aa2.7□□□□□ -1.98
VPS39-212ENST00000570023 KNTC1P50748 2209 aa2.69□□□□□ -1.98
VPS39-212ENST00000570023 ARFGEF3Q5TH69 2177 aa2.69□□□□□ -1.98
VPS39-212ENST00000570023 IGHV4-61A0A0C4DH41 118 aa2.69□□□□□ -1.98
VPS39-212ENST00000570023 Q8N9L7 120 aa2.69□□□□□ -1.98
VPS39-212ENST00000570023 DEFB104AQ8WTQ1 72 aa2.69□□□□□ -1.98
VPS39-212ENST00000570023 KAAG1Q9UBP8 84 aa2.69□□□□□ -1.98
VPS39-212ENST00000570023 CACNA1DQ01668 2161 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 MED13Q9UHV7 2174 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 IGLV9-49A0A0B4J1Y8 123 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 LINC00959A0A1B0GUT2 108 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 UQCR11O14957 56 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 CCL3L1P16619 93 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 KRTAP10-12P60413 245 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 SPRR4Q96PI1 79 aa2.68□□□□□ -1.98
VPS39-212ENST00000570023 IGLV5-48A0A075B6I7 105 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 DEFB131BA0A096LNP1 70 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 IGLV6-57P01721 117 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 PRB3Q04118 309 aaPredicted RBP2.67□□□□□ -1.98
VPS39-212ENST00000570023 KRTAP25-1Q3LHN0 102 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 C1orf137Q5JT78 98 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 MINOS1Q5TGZ0 78 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 Q8IZM0 81 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 MAPK1IP1LQ8NDC0 245 aa2.67□□□□□ -1.98
VPS39-212ENST00000570023 IGLV10-54A0A075B6I4 117 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 IGKV2D-24A0A075B6R9 120 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 IGHV3-74A0A0B4J1X5 117 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 K7ERS5 55 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 IGHV3-11P01762 117 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 PRB1P04280 392 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 DSCR10P59022 87 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 DEFB108BQ8NET1 73 aa2.66□□□□□ -1.98
VPS39-212ENST00000570023 CHTF8P0CG12 524 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 CCL14Q16627 93 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 SPINK14Q6IE38 97 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 DMAC1Q96GE9 116 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 PRR34Q9NV39 138 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 TOMM7Q9P0U1 55 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 DPM3Q9P2X0 92 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 KLK12Q9UKR0 248 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 FAM215AQ9Y5M1 114 aa2.65□□□□□ -1.99
VPS39-212ENST00000570023 COL27A1Q8IZC6 1860 aaPredicted RBP2.65□□□□□ -1.99
VPS39-212ENST00000570023 NOTCH3Q9UM47 2321 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 ARHGAP32A7KAX9 2087 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 IGLV1-50A0A075B6I6 118 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 ODF3BA8MYP8 253 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 PRB2P02812 416 aaPredicted RBP2.64□□□□□ -1.99
VPS39-212ENST00000570023 PI4KAP42356 2102 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 LINC00483Q53H64 154 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 Q8N9W7 124 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 CAMK2N2Q96S95 79 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 ZNF407Q9C0G0 2248 aa2.64□□□□□ -1.99
VPS39-212ENST00000570023 ZGRF1Q86YA3 2104 aa2.63□□□□□ -1.99
VPS39-212ENST00000570023 ZNF861PO60384 105 aa2.63□□□□□ -1.99
VPS39-212ENST00000570023 P0C880 135 aa2.63□□□□□ -1.99
VPS39-212ENST00000570023 COX7A1P24310 79 aa2.63□□□□□ -1.99
VPS39-212ENST00000570023 Q8NBF4 154 aa2.63□□□□□ -1.99
VPS39-212ENST00000570023 TP53AIP1Q9HCN2 124 aa2.63□□□□□ -1.99
VPS39-212ENST00000570023 K7EQZ3 153 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms