RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 Q8N2B8 174 aa12.45□□□□□ -0.42
SYNE3-204ENST00000555759 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.45□□□□□ -0.42
SYNE3-204ENST00000555759 H0Y9P7 68 aa12.44□□□□□ -0.42
SYNE3-204ENST00000555759 FHL2Q14192 279 aa12.44□□□□□ -0.42
SYNE3-204ENST00000555759 SPG11Q96JI7 2443 aa12.43□□□□□ -0.42
SYNE3-204ENST00000555759 PLAC8L1A1L4L8 177 aa12.43□□□□□ -0.42
SYNE3-204ENST00000555759 PRRC2AP48634 2157 aaKnown RBP12.43□□□□□ -0.42
SYNE3-204ENST00000555759 DSCAMO60469 2012 aa12.42□□□□□ -0.42
SYNE3-204ENST00000555759 FAM19A4Q96LR4 140 aa12.41□□□□□ -0.42
SYNE3-204ENST00000555759 SORL1Q92673 2214 aa12.41□□□□□ -0.42
SYNE3-204ENST00000555759 TRAV10A0A0B4J240 114 aa12.4□□□□□ -0.42
SYNE3-204ENST00000555759 A0A1B0GW54 56 aa12.4□□□□□ -0.42
SYNE3-204ENST00000555759 FAM218AQ96MZ4 157 aa12.4□□□□□ -0.42
SYNE3-204ENST00000555759 TECTAO75443 2155 aa12.4□□□□□ -0.43
SYNE3-204ENST00000555759 SPATA3Q8NHX4 192 aa12.39□□□□□ -0.43
SYNE3-204ENST00000555759 NOTCH2Q04721 2471 aa12.39□□□□□ -0.43
SYNE3-204ENST00000555759 SPINK6Q6UWN8 80 aa12.39□□□□□ -0.43
SYNE3-204ENST00000555759 REG3GQ6UW15 175 aa12.38□□□□□ -0.43
SYNE3-204ENST00000555759 C2orf48Q96LS8 159 aa12.38□□□□□ -0.43
SYNE3-204ENST00000555759 LINC01006Q8NI28 216 aa12.38□□□□□ -0.43
SYNE3-204ENST00000555759 CSPG4Q6UVK1 2322 aa12.37□□□□□ -0.43
SYNE3-204ENST00000555759 LOC110117498A0A087WWA1 95 aa12.37□□□□□ -0.43
SYNE3-204ENST00000555759 IL17DQ8TAD2 202 aa12.37□□□□□ -0.43
SYNE3-204ENST00000555759 LINC00474Q9P2X8 69 aa12.36□□□□□ -0.43
SYNE3-204ENST00000555759 IGHV3OR16-9A0A0B4J2B5 98 aa12.36□□□□□ -0.43
SYNE3-204ENST00000555759 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.35□□□□□ -0.43
SYNE3-204ENST00000555759 SMIM29Q86T20 159 aa12.34□□□□□ -0.43
SYNE3-204ENST00000555759 CEP192Q8TEP8 1941 aa12.34□□□□□ -0.43
SYNE3-204ENST00000555759 ADAMTS20P59510 1910 aa12.33□□□□□ -0.44
SYNE3-204ENST00000555759 A0A087WSZ3 146 aa12.33□□□□□ -0.44
SYNE3-204ENST00000555759 NHLRC4P0CG21 123 aaPredicted RBP12.33□□□□□ -0.44
SYNE3-204ENST00000555759 Q6ZQT0 140 aa12.33□□□□□ -0.44
SYNE3-204ENST00000555759 ACACBO00763 2458 aa12.33□□□□□ -0.44
SYNE3-204ENST00000555759 PCOTHQ58A44 107 aa12.33□□□□□ -0.44
SYNE3-204ENST00000555759 IGHV4-30-4P0DP06 118 aa12.33□□□□□ -0.44
SYNE3-204ENST00000555759 IGLV9-49A0A0B4J1Y8 123 aa12.32□□□□□ -0.44
SYNE3-204ENST00000555759 A8MTW9 85 aa12.32□□□□□ -0.44
SYNE3-204ENST00000555759 TET2Q6N021 2002 aaPredicted RBP12.32□□□□□ -0.44
SYNE3-204ENST00000555759 IGLV1-51P01701 117 aa12.31□□□□□ -0.44
SYNE3-204ENST00000555759 C6orf223Q8N319 242 aa12.31□□□□□ -0.44
SYNE3-204ENST00000555759 C11orf72Q8NBR9 251 aa12.31□□□□□ -0.44
SYNE3-204ENST00000555759 FHL3Q13643 280 aa12.31□□□□□ -0.44
SYNE3-204ENST00000555759 C1orf64Q8NEQ6 169 aa12.31□□□□□ -0.44
SYNE3-204ENST00000555759 HIVEP2P31629 2446 aa12.3□□□□□ -0.44
SYNE3-204ENST00000555759 AVPP01185 164 aa12.29□□□□□ -0.44
SYNE3-204ENST00000555759 LITAFQ99732 161 aa12.29□□□□□ -0.44
SYNE3-204ENST00000555759 H3BPC8 53 aa12.29□□□□□ -0.44
SYNE3-204ENST00000555759 Q9BRP9 147 aa12.29□□□□□ -0.44
SYNE3-204ENST00000555759 SMCR5Q8TEV8 140 aa12.29□□□□□ -0.44
SYNE3-204ENST00000555759 CUL9Q8IWT3 2517 aa12.29□□□□□ -0.44
SYNE3-204ENST00000555759 EXPH5Q8NEV8 1989 aa12.28□□□□□ -0.44
SYNE3-204ENST00000555759 ERC2-IT1O76042 136 aa12.27□□□□□ -0.44
SYNE3-204ENST00000555759 C7orf33Q8WU49 177 aa12.27□□□□□ -0.45
SYNE3-204ENST00000555759 IGHV6-1A0A0B4J1U7 121 aa12.25□□□□□ -0.45
SYNE3-204ENST00000555759 TM2D3Q9BRN9 247 aa12.23□□□□□ -0.45
SYNE3-204ENST00000555759 KIAA0087Q14695 138 aa12.22□□□□□ -0.45
SYNE3-204ENST00000555759 TP53AIP1Q9HCN2 124 aa12.22□□□□□ -0.45
SYNE3-204ENST00000555759 OTOGLQ3ZCN5 2332 aa12.21□□□□□ -0.46
SYNE3-204ENST00000555759 RAI1Q7Z5J4 1906 aaPredicted RBP12.21□□□□□ -0.46
SYNE3-204ENST00000555759 ELOF1P60002 83 aaKnown RBP12.2□□□□□ -0.46
SYNE3-204ENST00000555759 Q6ZRU5 148 aa12.2□□□□□ -0.46
SYNE3-204ENST00000555759 DEFB116Q30KQ4 102 aa12.19□□□□□ -0.46
SYNE3-204ENST00000555759 CDSNQ15517 529 aa12.19□□□□□ -0.46
SYNE3-204ENST00000555759 PTPN13Q12923 2485 aa12.18□□□□□ -0.46
SYNE3-204ENST00000555759 ATRXP46100 2492 aa12.17□□□□□ -0.46
SYNE3-204ENST00000555759 KLKP1Q107X0 134 aa12.17□□□□□ -0.46
SYNE3-204ENST00000555759 LYPD5Q6UWN5 251 aa12.16□□□□□ -0.46
SYNE3-204ENST00000555759 Q9UF83 564 aa12.16□□□□□ -0.46
SYNE3-204ENST00000555759 CACNA1AO00555 2505 aa12.15□□□□□ -0.46
SYNE3-204ENST00000555759 PRO3102Q9H379 93 aa12.14□□□□□ -0.47
SYNE3-204ENST00000555759 Q8NBF4 154 aa12.14□□□□□ -0.47
SYNE3-204ENST00000555759 KLK9Q2XQG4 91 aa12.13□□□□□ -0.47
SYNE3-204ENST00000555759 SERTAD4-AS1Q5TG53 156 aa12.13□□□□□ -0.47
SYNE3-204ENST00000555759 Q6ZTC4 211 aa12.13□□□□□ -0.47
SYNE3-204ENST00000555759 CYP4F30PQ9H0H9 118 aa12.12□□□□□ -0.47
SYNE3-204ENST00000555759 SPAG11AQ6PDA7 123 aa12.12□□□□□ -0.47
SYNE3-204ENST00000555759 A0A1B0GU69 56 aa12.11□□□□□ -0.47
SYNE3-204ENST00000555759 C16orf95Q9H693 158 aa12.11□□□□□ -0.47
SYNE3-204ENST00000555759 ACYP2P14621 99 aa12.1□□□□□ -0.47
SYNE3-204ENST00000555759 C22orf24Q9Y442 160 aa12.1□□□□□ -0.47
SYNE3-204ENST00000555759 INAFM1C9JVW0 142 aa12.09□□□□□ -0.47
SYNE3-204ENST00000555759 C6orf48Q9UBA6 75 aa12.09□□□□□ -0.47
SYNE3-204ENST00000555759 LY6G6DO95868 133 aa12.09□□□□□ -0.47
SYNE3-204ENST00000555759 LINC00336Q6ZUF6 198 aa12.09□□□□□ -0.47
SYNE3-204ENST00000555759 A0A1W2PPR1 153 aa12.07□□□□□ -0.48
SYNE3-204ENST00000555759 C8orf87E5RJ46 101 aa12.06□□□□□ -0.48
SYNE3-204ENST00000555759 SONP18583 2426 aaKnown RBP12.05□□□□□ -0.48
SYNE3-204ENST00000555759 TRAV22A0A0B4J277 110 aa12.05□□□□□ -0.48
SYNE3-204ENST00000555759 CD164Q04900 197 aa12.05□□□□□ -0.48
SYNE3-204ENST00000555759 CIRBP-AS1Q8TBR5 109 aa12.05□□□□□ -0.48
SYNE3-204ENST00000555759 NAV2Q8IVL1 2488 aa12.05□□□□□ -0.48
SYNE3-204ENST00000555759 PTPRBP23467 1997 aa12.04□□□□□ -0.48
SYNE3-204ENST00000555759 VPREB1P12018 145 aa12.04□□□□□ -0.48
SYNE3-204ENST00000555759 PRLHP81277 87 aa12.04□□□□□ -0.48
SYNE3-204ENST00000555759 H7BZZ5 65 aa12.03□□□□□ -0.48
SYNE3-204ENST00000555759 WIPF1O43516 503 aa12.03□□□□□ -0.48
SYNE3-204ENST00000555759 PLA2G2AP14555 144 aa12.02□□□□□ -0.49
SYNE3-204ENST00000555759 Q6ZRX8 168 aa12.01□□□□□ -0.49
SYNE3-204ENST00000555759 A8MUN3 132 aa12.01□□□□□ -0.49
SYNE3-204ENST00000555759 LINC00167Q96N53 147 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms