RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 NDUFA6P56556 154 aa5.84□□□□□ -1.47
SNHG1-215ENST00000540904 RPL37AP61513 92 aaKnown RBP5.84□□□□□ -1.47
SNHG1-215ENST00000540904 RPL18AQ02543 176 aaKnown RBP5.84□□□□□ -1.47
SNHG1-215ENST00000540904 KIAA0087Q14695 138 aa5.84□□□□□ -1.47
SNHG1-215ENST00000540904 PMVKQ15126 192 aa5.84□□□□□ -1.47
SNHG1-215ENST00000540904 C10orf25Q5T742 122 aa5.84□□□□□ -1.47
SNHG1-215ENST00000540904 LINC00469Q8N7U9 141 aa5.84□□□□□ -1.47
SNHG1-215ENST00000540904 PACRGQ96M98 296 aaPredicted RBP5.84□□□□□ -1.47
SNHG1-215ENST00000540904 MRPL35Q9NZE8 188 aaKnown RBP5.84□□□□□ -1.47
SNHG1-215ENST00000540904 TOMM7Q9P0U1 55 aa5.84□□□□□ -1.47
SNHG1-215ENST00000540904 TINCRA0A1B0GVN0 87 aa5.83□□□□□ -1.48
SNHG1-215ENST00000540904 RNF151Q2KHN1 245 aa5.83□□□□□ -1.48
SNHG1-215ENST00000540904 C2orf82Q6UX34 121 aa5.83□□□□□ -1.48
SNHG1-215ENST00000540904 COLCA2A8K830 154 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 ATP5LO75964 103 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 KRTAP10-4P60372 401 aaPredicted RBP5.82□□□□□ -1.48
SNHG1-215ENST00000540904 CKS1BP61024 79 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 PDZD11Q5EBL8 140 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 C6orf226Q5I0X4 101 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 BAGE3Q86Y29 109 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 CHCHD1Q96BP2 118 aaKnown RBP5.82□□□□□ -1.48
SNHG1-215ENST00000540904 C6orf48Q9UBA6 75 aa5.82□□□□□ -1.48
SNHG1-215ENST00000540904 SMIM1B2RUZ4 78 aa5.81□□□□□ -1.48
SNHG1-215ENST00000540904 SCO1O75880 301 aa5.81□□□□□ -1.48
SNHG1-215ENST00000540904 Q8IZM0 81 aa5.81□□□□□ -1.48
SNHG1-215ENST00000540904 C7orf33Q8WU49 177 aa5.81□□□□□ -1.48
SNHG1-215ENST00000540904 ABCA13Q86UQ4 5058 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 IGLV5-45A0A087WSX0 123 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 TRBV30A0A0K0K1B3 111 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 A0A1W2PNN7 141 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 HSBP1O75506 76 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 SPINK8P0C7L1 97 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 GAGE2EQ4V326 116 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 C9orf116Q5BN46 136 aaPredicted RBP5.8□□□□□ -1.48
SNHG1-215ENST00000540904 Q6ZRP5 223 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 GAGE2DQ9UEU5 116 aa5.8□□□□□ -1.48
SNHG1-215ENST00000540904 SRRM2Q9UQ35 2752 aaKnown RBP5.79□□□□□ -1.48
SNHG1-215ENST00000540904 FAT1Q14517 4588 aa5.79□□□□□ -1.48
SNHG1-215ENST00000540904 H3BRM9 83 aa5.79□□□□□ -1.48
SNHG1-215ENST00000540904 TLX1NBP0CAT3 122 aa5.79□□□□□ -1.48
SNHG1-215ENST00000540904 IGLC3P0DOY3 106 aa5.79□□□□□ -1.48
SNHG1-215ENST00000540904 FAM19A2Q8N3H0 131 aa5.79□□□□□ -1.48
SNHG1-215ENST00000540904 NDUFC2-KCTD14E9PQ53 114 aa5.78□□□□□ -1.48
SNHG1-215ENST00000540904 F8VRH5 84 aa5.78□□□□□ -1.48
SNHG1-215ENST00000540904 SERF1AO75920 110 aa5.78□□□□□ -1.48
SNHG1-215ENST00000540904 COX7B2Q8TF08 81 aa5.78□□□□□ -1.48
SNHG1-215ENST00000540904 IFI27L1Q96BM0 104 aa5.78□□□□□ -1.48
SNHG1-215ENST00000540904 FAM168BA1KXE4 195 aa5.77□□□□□ -1.49
SNHG1-215ENST00000540904 ZNF22P17026 224 aaPredicted RBP5.77□□□□□ -1.49
SNHG1-215ENST00000540904 CXCL5P42830 114 aa5.77□□□□□ -1.49
SNHG1-215ENST00000540904 HNRNPA3P51991 378 aaKnown RBP5.77□□□□□ -1.49
SNHG1-215ENST00000540904 TMEM170BQ5T4T1 132 aa5.77□□□□□ -1.49
SNHG1-215ENST00000540904 CHTOPQ9Y3Y2 248 aaKnown RBP5.77□□□□□ -1.49
SNHG1-215ENST00000540904 DNAH8Q96JB1 4490 aa5.77□□□□□ -1.49
SNHG1-215ENST00000540904 C11orf86A6NJI1 115 aa5.76□□□□□ -1.49
SNHG1-215ENST00000540904 LINC00310P59036 64 aa5.76□□□□□ -1.49
SNHG1-215ENST00000540904 PRR3P79522 188 aaKnown RBP5.76□□□□□ -1.49
SNHG1-215ENST00000540904 FAM19A5Q7Z5A7 132 aaPredicted RBP5.76□□□□□ -1.49
SNHG1-215ENST00000540904 TRAV12-1A0A0B4J245 112 aa5.75□□□□□ -1.49
SNHG1-215ENST00000540904 H0Y8G0 127 aa5.75□□□□□ -1.49
SNHG1-215ENST00000540904 NUPR1O60356 82 aa5.75□□□□□ -1.49
SNHG1-215ENST00000540904 LEPROTL1O95214 131 aa5.75□□□□□ -1.49
SNHG1-215ENST00000540904 PHF5AQ7RTV0 110 aaKnown RBP5.75□□□□□ -1.49
SNHG1-215ENST00000540904 FLG2Q5D862 2391 aaPredicted RBP5.75□□□□□ -1.49
SNHG1-215ENST00000540904 IGLV5-39A0A0G2JS06 123 aa5.74□□□□□ -1.49
SNHG1-215ENST00000540904 C9orf129Q5T035 196 aaKnown RBP5.74□□□□□ -1.49
SNHG1-215ENST00000540904 XAGE1AQ9HD64 81 aa5.74□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BKO60814 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BJP06899 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 FABP4P15090 132 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BOP23527 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BBP33778 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BDP58876 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BCP62807 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST2H2BEQ16778 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BHQ93079 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BNQ99877 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HIST1H2BMQ99879 126 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 HSPB8Q9UJY1 196 aa5.73□□□□□ -1.49
SNHG1-215ENST00000540904 KRTAP29-1A8MX34 341 aaPredicted RBP5.72□□□□□ -1.49
SNHG1-215ENST00000540904 M0QXV9 152 aa5.72□□□□□ -1.49
SNHG1-215ENST00000540904 ODF1Q14990 250 aa5.72□□□□□ -1.49
SNHG1-215ENST00000540904 KRTAP7-1Q8IUC3 87 aa5.72□□□□□ -1.49
SNHG1-215ENST00000540904 PSORS1C2Q9UIG4 136 aa5.72□□□□□ -1.49
SNHG1-215ENST00000540904 VPS13BQ7Z7G8 4022 aa5.71□□□□□ -1.5
SNHG1-215ENST00000540904 TMEM223A0PJW6 202 aa5.71□□□□□ -1.5
SNHG1-215ENST00000540904 PFN2P35080 140 aa5.71□□□□□ -1.5
SNHG1-215ENST00000540904 SERTAD4-AS1Q5TG53 156 aa5.71□□□□□ -1.5
SNHG1-215ENST00000540904 ZNF625Q96I27 306 aaPredicted RBP5.71□□□□□ -1.5
SNHG1-215ENST00000540904 OXTP01178 125 aa5.7□□□□□ -1.5
SNHG1-215ENST00000540904 UBE2BP63146 152 aa5.7□□□□□ -1.5
SNHG1-215ENST00000540904 C1orf137Q5JT78 98 aa5.7□□□□□ -1.5
SNHG1-215ENST00000540904 KRTAP11-1Q8IUC1 163 aa5.7□□□□□ -1.5
SNHG1-215ENST00000540904 PLNP26678 52 aa5.69□□□□□ -1.5
SNHG1-215ENST00000540904 SFTA2Q6UW10 78 aa5.69□□□□□ -1.5
SNHG1-215ENST00000540904 PMCHL2Q9BQD1 86 aa5.69□□□□□ -1.5
SNHG1-215ENST00000540904 MAP1LC3CQ9BXW4 147 aa5.69□□□□□ -1.5
SNHG1-215ENST00000540904 ERG28Q9UKR5 140 aa5.69□□□□□ -1.5
SNHG1-215ENST00000540904 TMA7Q9Y2S6 64 aaKnown RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms