RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SND1-IT1Q9HBX3 110 aa9.16□□□□□ -0.94
LDLR-203ENST00000535915 PRO0255Q9UI72 69 aa9.16□□□□□ -0.94
LDLR-203ENST00000535915 TRAV13-2A0A0B4J235 113 aa9.16□□□□□ -0.94
LDLR-203ENST00000535915 CRPP02741 224 aa9.16□□□□□ -0.94
LDLR-203ENST00000535915 FAM222AQ5U5X8 452 aa9.15□□□□□ -0.94
LDLR-203ENST00000535915 TENM1Q9UKZ4 2725 aa9.15□□□□□ -0.94
LDLR-203ENST00000535915 OTOGQ6ZRI0 2925 aa9.15□□□□□ -0.94
LDLR-203ENST00000535915 PFN2P35080 140 aa9.15□□□□□ -0.95
LDLR-203ENST00000535915 XCL1P47992 114 aa9.15□□□□□ -0.95
LDLR-203ENST00000535915 C9orf66Q5T8R8 295 aa9.15□□□□□ -0.95
LDLR-203ENST00000535915 NOTCH2Q04721 2471 aa9.15□□□□□ -0.95
LDLR-203ENST00000535915 CLPSL2Q6UWE3 100 aa9.14□□□□□ -0.95
LDLR-203ENST00000535915 C11orf68Q9H3H3 251 aaKnown RBP9.14□□□□□ -0.95
LDLR-203ENST00000535915 SS18Q15532 418 aa9.14□□□□□ -0.95
LDLR-203ENST00000535915 C3orf22Q8N5N4 141 aa9.14□□□□□ -0.95
LDLR-203ENST00000535915 NSD1Q96L73 2696 aaPredicted RBP9.13□□□□□ -0.95
LDLR-203ENST00000535915 IBA57-AS1B1ANH7 110 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 DEFB4AO15263 64 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 DEFB135Q30KP9 77 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 C6orf226Q5I0X4 101 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 LINC00337Q8N6G1 96 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 IGKV2-28A0A075B6P5 120 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 A0A1B0GUV1 79 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 INAFM1C9JVW0 142 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 PAX4O43316 350 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 IGKV2D-28P01615 120 aa9.13□□□□□ -0.95
LDLR-203ENST00000535915 LYRM9A8MSI8 78 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 TRACP01848 142 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 RPL28P46779 137 aaKnown RBP9.12□□□□□ -0.95
LDLR-203ENST00000535915 CCL18P55774 89 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 DEFB121Q5J5C9 76 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 FAM218AQ96MZ4 157 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 UQCRQO14949 82 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 IMUPQ9GZP8 106 aa9.12□□□□□ -0.95
LDLR-203ENST00000535915 J3KT08 172 aa9.11□□□□□ -0.95
LDLR-203ENST00000535915 KLK5Q9Y337 293 aaPredicted RBP9.11□□□□□ -0.95
LDLR-203ENST00000535915 FAM19A5Q7Z5A7 132 aaPredicted RBP9.1□□□□□ -0.95
LDLR-203ENST00000535915 BAALC-AS2P0C853 105 aa9.1□□□□□ -0.95
LDLR-203ENST00000535915 APOC4P55056 127 aa9.09□□□□□ -0.95
LDLR-203ENST00000535915 ACYP1P07311 99 aa9.09□□□□□ -0.95
LDLR-203ENST00000535915 SMIM11BQ8TCY0 68 aa9.09□□□□□ -0.95
LDLR-203ENST00000535915 IGHV4-28A0A0C4DH34 117 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 LINC00269Q8N2A0 174 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 LINC00526Q96FQ7 95 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 DAD1P61803 113 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 Q8IZM0 81 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 Q9HAA7 133 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 ATRQ13535 2644 aa9.08□□□□□ -0.96
LDLR-203ENST00000535915 TEP1Q99973 2627 aaKnown RBP9.07□□□□□ -0.96
LDLR-203ENST00000535915 OR13C6PQ8NH95 151 aa9.07□□□□□ -0.96
LDLR-203ENST00000535915 ANGP03950 147 aaKnown RBP9.06□□□□□ -0.96
LDLR-203ENST00000535915 GAGE2AQ6NT46 116 aa9.06□□□□□ -0.96
LDLR-203ENST00000535915 LINC00643Q86TS7 51 aa9.06□□□□□ -0.96
LDLR-203ENST00000535915 TRRAPQ9Y4A5 3859 aa9.06□□□□□ -0.96
LDLR-203ENST00000535915 IGLV10-54A0A075B6I4 117 aa9.06□□□□□ -0.96
LDLR-203ENST00000535915 Q8N3U1 123 aa9.06□□□□□ -0.96
LDLR-203ENST00000535915 A0A1B0GX51 115 aa9.05□□□□□ -0.96
LDLR-203ENST00000535915 CELA1Q9UNI1 258 aa9.05□□□□□ -0.96
LDLR-203ENST00000535915 A0A087WYN8 130 aa9.05□□□□□ -0.96
LDLR-203ENST00000535915 DNAL4O96015 105 aa9.05□□□□□ -0.96
LDLR-203ENST00000535915 ATP5G1P05496 136 aa9.05□□□□□ -0.96
LDLR-203ENST00000535915 SMCR5Q8TEV8 140 aa9.05□□□□□ -0.96
LDLR-203ENST00000535915 CD164L2Q6UWJ8 174 aa9.04□□□□□ -0.96
LDLR-203ENST00000535915 LINC01561Q8N1V8 128 aa9.04□□□□□ -0.96
LDLR-203ENST00000535915 CHCHD10Q8WYQ3 142 aaPredicted RBP9.04□□□□□ -0.96
LDLR-203ENST00000535915 C22orf24Q9Y442 160 aa9.04□□□□□ -0.96
LDLR-203ENST00000535915 COX7CP15954 63 aa9.04□□□□□ -0.96
LDLR-203ENST00000535915 MALP21145 153 aa9.04□□□□□ -0.96
LDLR-203ENST00000535915 REG3AQ06141 175 aa9.04□□□□□ -0.96
LDLR-203ENST00000535915 H0YGX0 51 aa9.03□□□□□ -0.96
LDLR-203ENST00000535915 Q8NAQ8 132 aa9.03□□□□□ -0.96
LDLR-203ENST00000535915 MIFP14174 115 aa9.03□□□□□ -0.96
LDLR-203ENST00000535915 HTN3P15516 51 aa9.03□□□□□ -0.96
LDLR-203ENST00000535915 HIVEP1P15822 2718 aa9.03□□□□□ -0.96
LDLR-203ENST00000535915 KIAA0087Q14695 138 aa9.01□□□□□ -0.97
LDLR-203ENST00000535915 SPART-AS1P0CW21 52 aa9.01□□□□□ -0.97
LDLR-203ENST00000535915 hADV29S1A0JD25 119 aa9□□□□□ -0.97
LDLR-203ENST00000535915 LECT2O14960 151 aa9□□□□□ -0.97
LDLR-203ENST00000535915 INAFM2P0DMQ5 153 aa9□□□□□ -0.97
LDLR-203ENST00000535915 CXCL5P42830 114 aa9□□□□□ -0.97
LDLR-203ENST00000535915 RPS28P62857 69 aaKnown RBP9□□□□□ -0.97
LDLR-203ENST00000535915 CRYGAP11844 174 aa8.99□□□□□ -0.97
LDLR-203ENST00000535915 IGHV4-30-4P0DP06 118 aa8.99□□□□□ -0.97
LDLR-203ENST00000535915 PRR3P79522 188 aaKnown RBP8.99□□□□□ -0.97
LDLR-203ENST00000535915 COX17Q14061 63 aa8.99□□□□□ -0.97
LDLR-203ENST00000535915 C9orf116Q5BN46 136 aaPredicted RBP8.98□□□□□ -0.97
LDLR-203ENST00000535915 ATOX1O00244 68 aa8.98□□□□□ -0.97
LDLR-203ENST00000535915 WIPF1O43516 503 aa8.97□□□□□ -0.97
LDLR-203ENST00000535915 C2orf48Q96LS8 159 aa8.97□□□□□ -0.97
LDLR-203ENST00000535915 LELP1Q5T871 98 aa8.97□□□□□ -0.97
LDLR-203ENST00000535915 SLPIP03973 132 aa8.96□□□□□ -0.98
LDLR-203ENST00000535915 WFDC9Q8NEX5 89 aa8.96□□□□□ -0.98
LDLR-203ENST00000535915 C9orf129Q5T035 196 aaKnown RBP8.95□□□□□ -0.98
LDLR-203ENST00000535915 NDUFC2O95298 119 aa8.95□□□□□ -0.98
LDLR-203ENST00000535915 KLK12Q9UKR0 248 aa8.95□□□□□ -0.98
LDLR-203ENST00000535915 SDIM1Q6ZPB5 146 aa8.95□□□□□ -0.98
LDLR-203ENST00000535915 C14orf132Q9NPU4 83 aa8.95□□□□□ -0.98
LDLR-203ENST00000535915 NANOS2P60321 138 aaKnown RBP8.94□□□□□ -0.98
LDLR-203ENST00000535915 C6orf223Q8N319 242 aa8.94□□□□□ -0.98
LDLR-203ENST00000535915 SPAG11BQ08648 103 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms