RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 XCL1P47992 114 aa14.72□□□□□ -0.05
VPS28-205ENST00000526204 ACYP1P07311 99 aa14.72□□□□□ -0.05
VPS28-205ENST00000526204 Q8IZM0 81 aa14.72□□□□□ -0.05
VPS28-205ENST00000526204 PFN2P35080 140 aa14.71□□□□□ -0.05
VPS28-205ENST00000526204 FAM218AQ96MZ4 157 aa14.71□□□□□ -0.05
VPS28-205ENST00000526204 TRAV26-1A0A087WT03 109 aa14.71□□□□□ -0.06
VPS28-205ENST00000526204 APOC4P55056 127 aa14.71□□□□□ -0.06
VPS28-205ENST00000526204 SMIM11BQ8TCY0 68 aa14.69□□□□□ -0.06
VPS28-205ENST00000526204 H0YGX0 51 aa14.68□□□□□ -0.06
VPS28-205ENST00000526204 ANAPC13Q9BS18 74 aa14.68□□□□□ -0.06
VPS28-205ENST00000526204 A0A096LPF7 62 aa14.67□□□□□ -0.06
VPS28-205ENST00000526204 DEFB135Q30KP9 77 aa14.67□□□□□ -0.06
VPS28-205ENST00000526204 SPATA3Q8NHX4 192 aa14.65□□□□□ -0.06
VPS28-205ENST00000526204 DAD1P61803 113 aa14.65□□□□□ -0.06
VPS28-205ENST00000526204 CLPSL2Q6UWE3 100 aa14.65□□□□□ -0.06
VPS28-205ENST00000526204 CD164L2Q6UWJ8 174 aa14.65□□□□□ -0.06
VPS28-205ENST00000526204 C11orf68Q9H3H3 251 aaKnown RBP14.65□□□□□ -0.06
VPS28-205ENST00000526204 IGHV4-28A0A0C4DH34 117 aa14.64□□□□□ -0.07
VPS28-205ENST00000526204 TTC32Q5I0X7 151 aa14.64□□□□□ -0.07
VPS28-205ENST00000526204 INAFM1C9JVW0 142 aa14.63□□□□□ -0.07
VPS28-205ENST00000526204 DNAL4O96015 105 aa14.63□□□□□ -0.07
VPS28-205ENST00000526204 INAFM2P0DMQ5 153 aa14.63□□□□□ -0.07
VPS28-205ENST00000526204 MALP21145 153 aa14.63□□□□□ -0.07
VPS28-205ENST00000526204 LINC00269Q8N2A0 174 aa14.63□□□□□ -0.07
VPS28-205ENST00000526204 C22orf24Q9Y442 160 aa14.63□□□□□ -0.07
VPS28-205ENST00000526204 NDUFV3P56181 108 aaKnown RBP14.62□□□□□ -0.07
VPS28-205ENST00000526204 Q9HAA7 133 aa14.62□□□□□ -0.07
VPS28-205ENST00000526204 DEFB4AO15263 64 aa14.62□□□□□ -0.07
VPS28-205ENST00000526204 MIFP14174 115 aa14.62□□□□□ -0.07
VPS28-205ENST00000526204 CXCL5P42830 114 aa14.62□□□□□ -0.07
VPS28-205ENST00000526204 ATP5G1P05496 136 aa14.61□□□□□ -0.07
VPS28-205ENST00000526204 OR13C6PQ8NH95 151 aa14.61□□□□□ -0.07
VPS28-205ENST00000526204 COX17Q14061 63 aa14.6□□□□□ -0.07
VPS28-205ENST00000526204 ANGP03950 147 aaKnown RBP14.6□□□□□ -0.07
VPS28-205ENST00000526204 CHCHD10Q8WYQ3 142 aaPredicted RBP14.6□□□□□ -0.07
VPS28-205ENST00000526204 A0A087WYN8 130 aa14.59□□□□□ -0.07
VPS28-205ENST00000526204 REG3AQ06141 175 aa14.59□□□□□ -0.07
VPS28-205ENST00000526204 CFAP161Q6P656 301 aa14.59□□□□□ -0.07
VPS28-205ENST00000526204 Q8NAQ8 132 aa14.59□□□□□ -0.07
VPS28-205ENST00000526204 KIAA0087Q14695 138 aa14.58□□□□□ -0.08
VPS28-205ENST00000526204 FN1P02751 2386 aaKnown RBP14.58□□□□□ -0.08
VPS28-205ENST00000526204 TRBV7-7A0A0K0K1E9 115 aa14.57□□□□□ -0.08
VPS28-205ENST00000526204 SPART-AS1P0CW21 52 aa14.57□□□□□ -0.08
VPS28-205ENST00000526204 NHLRC4P0CG21 123 aaPredicted RBP14.56□□□□□ -0.08
VPS28-205ENST00000526204 NDUFC2O95298 119 aa14.55□□□□□ -0.08
VPS28-205ENST00000526204 CELA1Q9UNI1 258 aa14.55□□□□□ -0.08
VPS28-205ENST00000526204 HIVEP1P15822 2718 aa14.54□□□□□ -0.08
VPS28-205ENST00000526204 IMUPQ9GZP8 106 aa14.54□□□□□ -0.08
VPS28-205ENST00000526204 LINC00643Q86TS7 51 aa14.54□□□□□ -0.08
VPS28-205ENST00000526204 NSD1Q96L73 2696 aaPredicted RBP14.54□□□□□ -0.08
VPS28-205ENST00000526204 LECT2O14960 151 aa14.53□□□□□ -0.08
VPS28-205ENST00000526204 SDIM1Q6ZPB5 146 aa14.53□□□□□ -0.08
VPS28-205ENST00000526204 IGLV10-54A0A075B6I4 117 aa14.53□□□□□ -0.08
VPS28-205ENST00000526204 LELP1Q5T871 98 aa14.53□□□□□ -0.08
VPS28-205ENST00000526204 WFDC9Q8NEX5 89 aa14.52□□□□□ -0.09
VPS28-205ENST00000526204 Q8N3U1 123 aa14.51□□□□□ -0.09
VPS28-205ENST00000526204 NBEAL2Q6ZNJ1 2754 aa14.51□□□□□ -0.09
VPS28-205ENST00000526204 WIPF1O43516 503 aa14.5□□□□□ -0.09
VPS28-205ENST00000526204 OBSCN-AS1Q96MR7 158 aa14.5□□□□□ -0.09
VPS28-205ENST00000526204 A0A1B0GX51 115 aa14.49□□□□□ -0.09
VPS28-205ENST00000526204 GAGE2AQ6NT46 116 aa14.49□□□□□ -0.09
VPS28-205ENST00000526204 SMCR5Q8TEV8 140 aa14.49□□□□□ -0.09
VPS28-205ENST00000526204 TMEM126AQ9H061 195 aa14.49□□□□□ -0.09
VPS28-205ENST00000526204 KLK5Q9Y337 293 aaPredicted RBP14.49□□□□□ -0.09
VPS28-205ENST00000526204 VWFP04275 2813 aa14.49□□□□□ -0.09
VPS28-205ENST00000526204 MUC7Q8TAX7 377 aa14.48□□□□□ -0.09
VPS28-205ENST00000526204 IGHV4-30-4P0DP06 118 aa14.48□□□□□ -0.09
VPS28-205ENST00000526204 HTN3P15516 51 aa14.48□□□□□ -0.09
VPS28-205ENST00000526204 FLNBO75369 2602 aaKnown RBP14.47□□□□□ -0.09
VPS28-205ENST00000526204 ORMDL1Q9P0S3 153 aa14.47□□□□□ -0.09
VPS28-205ENST00000526204 NANOS2P60321 138 aaKnown RBP14.45□□□□□ -0.1
VPS28-205ENST00000526204 PRR3P79522 188 aaKnown RBP14.45□□□□□ -0.1
VPS28-205ENST00000526204 PRR34Q9NV39 138 aa14.45□□□□□ -0.1
VPS28-205ENST00000526204 C9orf116Q5BN46 136 aaPredicted RBP14.44□□□□□ -0.1
VPS28-205ENST00000526204 LINC00167Q96N53 147 aa14.44□□□□□ -0.1
VPS28-205ENST00000526204 SPAG11BQ08648 103 aa14.43□□□□□ -0.1
VPS28-205ENST00000526204 C14orf132Q9NPU4 83 aa14.42□□□□□ -0.1
VPS28-205ENST00000526204 C9orf129Q5T035 196 aaKnown RBP14.42□□□□□ -0.1
VPS28-205ENST00000526204 SLPIP03973 132 aa14.41□□□□□ -0.1
VPS28-205ENST00000526204 A0A0J9YWU9 116 aa14.41□□□□□ -0.1
VPS28-205ENST00000526204 Q8N814 137 aa14.41□□□□□ -0.1
VPS28-205ENST00000526204 KLK12Q9UKR0 248 aa14.41□□□□□ -0.1
VPS28-205ENST00000526204 UNQ6190/PRO20217Q6UXQ8 127 aa14.39□□□□□ -0.11
VPS28-205ENST00000526204 CYSRT1A8MQ03 144 aa14.38□□□□□ -0.11
VPS28-205ENST00000526204 S100A7L2Q5SY68 101 aa14.38□□□□□ -0.11
VPS28-205ENST00000526204 LYPD5Q6UWN5 251 aa14.38□□□□□ -0.11
VPS28-205ENST00000526204 NCR3O14931 201 aa14.37□□□□□ -0.11
VPS28-205ENST00000526204 C10orf25Q5T742 122 aa14.37□□□□□ -0.11
VPS28-205ENST00000526204 ENHOQ6UWT2 76 aa14.37□□□□□ -0.11
VPS28-205ENST00000526204 C6orf223Q8N319 242 aa14.37□□□□□ -0.11
VPS28-205ENST00000526204 FAM236AA0A1B0GUQ0 79 aa14.36□□□□□ -0.11
VPS28-205ENST00000526204 FAM236BA0A1B0GV22 79 aa14.36□□□□□ -0.11
VPS28-205ENST00000526204 CCDC179H3BU77 68 aa14.36□□□□□ -0.11
VPS28-205ENST00000526204 TMEM256-PLSCR3K7ERE1 68 aa14.36□□□□□ -0.11
VPS28-205ENST00000526204 B5MCH6 92 aa14.36□□□□□ -0.11
VPS28-205ENST00000526204 JMJD7-PLA2G4BH0Y9G9 81 aa14.36□□□□□ -0.11
VPS28-205ENST00000526204 TENM1Q9UKZ4 2725 aa14.35□□□□□ -0.11
VPS28-205ENST00000526204 GVQW2A0A096LPI5 108 aaPredicted RBP14.35□□□□□ -0.11
VPS28-205ENST00000526204 H3BNG1 76 aa14.35□□□□□ -0.11
VPS28-205ENST00000526204 C6orf99Q4VX62 202 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms