RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SCGB1D4Q6XE38 83 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 LCA10Q71F78 164 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 DYNAPQ8N1N2 210 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 FAM216BQ8N7L0 139 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 WFDC5Q8TCV5 224 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 SPTSSAQ969W0 71 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 RPP21Q9H633 154 aaKnown RBP1.32□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM14AQ9Y6G1 99 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 R4GMQ9 66 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 LYSTQ99698 3801 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 DSCAMO60469 2012 aa1.32□□□□□ -2.2
HMGB1-208ENST00000490788 RAI1Q7Z5J4 1906 aaPredicted RBP1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1D-17A0A075B6S4 117 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV23DV6A0A075B6W5 121 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV3OR16-13A0A075B7E8 117 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 A0A096LNT2 108 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGLV1-36A0A0B4J1U3 117 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV40A0A0B4J280 105 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV5-51A0A0C4DH38 117 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM223A0PJW6 202 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 ZNF815PA8K554 130 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 DEFB108AA8MXU0 73 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 F8WEM9 126 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 BUB1B-PAK6H3BSN5 160 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 M0R135 149 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 COX7A2LO14548 114 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 SH2D1AO60880 128 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1-5P01602 117 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV3-33P01772 117 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 PLNP26678 52 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 CKS2P33552 79 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 MP68P56378 58 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 ATP5EP56381 51 aaPredicted RBP1.31□□□□□ -2.2
HMGB1-208ENST00000490788 LINC00313P59037 77 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 UBE2BP63146 152 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 CLEC19AQ6UXS0 136 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 MIR17HGQ75NE6 70 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 VN1R4Q7Z5H5 301 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 GPHB5Q86YW7 130 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 LINC00337Q8N6G1 96 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 DAND5Q8N907 189 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM263Q8WUH6 116 aaKnown RBP1.31□□□□□ -2.2
HMGB1-208ENST00000490788 RMI2Q96E14 147 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 DYNLRB1Q9NP97 96 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 CCL28Q9NRJ3 127 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 MRPL35Q9NZE8 188 aaKnown RBP1.31□□□□□ -2.2
HMGB1-208ENST00000490788 FAM215AQ9Y5M1 114 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 SNURFQ9Y675 71 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 DNAH9Q9NYC9 4486 aa1.31□□□□□ -2.2
HMGB1-208ENST00000490788 WNK2Q9Y3S1 2297 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV7A0A075B6U4 112 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV8-3A0A0A6YYJ7 113 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1D-13A0A0B4J2D9 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 PIGBOS1A0A0B4J2F0 54 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1-9A0A0C4DH69 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 CLPSL1A2RUU4 121 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 D6R8Y8 96 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 E7EQL1 145 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 PSPHP1O15172 72 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1-39P01597 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV3-30P01768 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TFF1P04155 84 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1D-39P04432 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV3-30-5P0DP03 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1-13P0DP09 117 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 RPL28P46779 137 aaKnown RBP1.3□□□□□ -2.2
HMGB1-208ENST00000490788 EIF4EBP1Q13541 118 aaPredicted RBP1.3□□□□□ -2.2
HMGB1-208ENST00000490788 PLGLAQ15195 96 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 ESRGQ1W209 222 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 MRPL51Q4U2R6 128 aaKnown RBP1.3□□□□□ -2.2
HMGB1-208ENST00000490788 SPINK9Q5DT21 86 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 LINC00322Q6ZN03 302 aaPredicted RBP1.3□□□□□ -2.2
HMGB1-208ENST00000490788 C7orf65Q6ZTY9 151 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 ORMDL3Q8N138 153 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 LINC00269Q8N2A0 174 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 SPTSSBQ8NFR3 76 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 CLEC2BQ92478 149 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TOMM6Q96B49 74 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 CCL13Q99616 98 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TIMM21Q9BVV7 248 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM167BQ9NRX6 74 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 UBE2D4Q9Y2X8 147 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 ZNF706Q9Y5V0 76 aaPredicted RBP1.3□□□□□ -2.2
HMGB1-208ENST00000490788 FAT4Q6V0I7 4981 aa1.3□□□□□ -2.2
HMGB1-208ENST00000490788 FLG2Q5D862 2391 aaPredicted RBP1.29□□□□□ -2.2
HMGB1-208ENST00000490788 SCN1AP35498 2009 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 MPDZO75970 2070 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV13-2A0A0B4J235 113 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV3A0A0B4J244 114 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV12-3A0A0B4J271 114 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 A0A0J9YY99 117 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 TRBV30A0A0K0K1B3 111 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 A0A1B0GUT8 65 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 LRCOL1A6NCL2 159 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 A6NN06 94 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 C12orf77C9JDV5 145 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 TRBV12-3P01733 135 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 COX6CP09669 75 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms