RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 NDUFC2-KCTD14E9PQ53 114 aa10.11□□□□□ -0.79
USP40-212ENST00000473191 M0QXV9 152 aa10.11□□□□□ -0.79
USP40-212ENST00000473191 FAM19A3Q7Z5A8 133 aa10.11□□□□□ -0.79
USP40-212ENST00000473191 LINC00469Q8N7U9 141 aa10.11□□□□□ -0.79
USP40-212ENST00000473191 NXT2Q9NPJ8 142 aaKnown RBP10.11□□□□□ -0.79
USP40-212ENST00000473191 CDKN2A-AS1Q9UH64 79 aa10.11□□□□□ -0.79
USP40-212ENST00000473191 LPAP08519 4548 aa10.1□□□□□ -0.79
USP40-212ENST00000473191 LINC01561Q8N1V8 128 aa10.1□□□□□ -0.79
USP40-212ENST00000473191 PRR26Q8N8Z3 221 aa10.1□□□□□ -0.79
USP40-212ENST00000473191 PACRGQ96M98 296 aaPredicted RBP10.1□□□□□ -0.79
USP40-212ENST00000473191 TOMM6Q96B49 74 aa10.09□□□□□ -0.79
USP40-212ENST00000473191 K7EMI3 77 aa10.08□□□□□ -0.8
USP40-212ENST00000473191 NPSP0C0P6 89 aa10.07□□□□□ -0.8
USP40-212ENST00000473191 YPEL4Q96NS1 127 aa10.07□□□□□ -0.8
USP40-212ENST00000473191 TIMM17AQ99595 171 aa10.07□□□□□ -0.8
USP40-212ENST00000473191 ALKBH7Q9BT30 221 aaPredicted RBP10.07□□□□□ -0.8
USP40-212ENST00000473191 XAGE1AQ9HD64 81 aa10.07□□□□□ -0.8
USP40-212ENST00000473191 H0Y9J4 135 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 PRSS2P07478 247 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 KRTAP1-4P0C5Y4 121 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 UBE2BP63146 152 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 COX19Q49B96 90 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 C6orf226Q5I0X4 101 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 Q8IZM0 81 aa10.06□□□□□ -0.8
USP40-212ENST00000473191 COLCA2A8K830 154 aa10.05□□□□□ -0.8
USP40-212ENST00000473191 CKS1BP61024 79 aa10.05□□□□□ -0.8
USP40-212ENST00000473191 HERVK_113P63121 156 aa10.05□□□□□ -0.8
USP40-212ENST00000473191 DIRC1Q969H9 104 aa10.05□□□□□ -0.8
USP40-212ENST00000473191 ERASQ7Z444 233 aa10.04□□□□□ -0.8
USP40-212ENST00000473191 SCGB3A1Q96QR1 104 aa10.04□□□□□ -0.8
USP40-212ENST00000473191 GEMIN7Q9H840 131 aaKnown RBP10.04□□□□□ -0.8
USP40-212ENST00000473191 SMIM1B2RUZ4 78 aa10.03□□□□□ -0.8
USP40-212ENST00000473191 C22orf24Q9Y442 160 aa10.03□□□□□ -0.8
USP40-212ENST00000473191 LINC01546A6NGU7 62 aa10.02□□□□□ -0.81
USP40-212ENST00000473191 GNB1LQ9BYB4 327 aa10.02□□□□□ -0.81
USP40-212ENST00000473191 F8VRH5 84 aa10□□□□□ -0.81
USP40-212ENST00000473191 SPINK8P0C7L1 97 aa10□□□□□ -0.81
USP40-212ENST00000473191 SEC11AP67812 179 aa10□□□□□ -0.81
USP40-212ENST00000473191 PAPPA-AS1Q5QFB9 102 aa10□□□□□ -0.81
USP40-212ENST00000473191 CST9LQ9H4G1 147 aa10□□□□□ -0.81
USP40-212ENST00000473191 TRAPPC1Q9Y5R8 145 aa10□□□□□ -0.81
USP40-212ENST00000473191 IGLV5-45A0A087WSX0 123 aa9.99□□□□□ -0.81
USP40-212ENST00000473191 TINCRA0A1B0GVN0 87 aa9.99□□□□□ -0.81
USP40-212ENST00000473191 MRPL18Q9H0U6 180 aaKnown RBP9.99□□□□□ -0.81
USP40-212ENST00000473191 G0S2P27469 103 aa9.98□□□□□ -0.81
USP40-212ENST00000473191 URB1-AS1Q96HZ7 61 aa9.98□□□□□ -0.81
USP40-212ENST00000473191 A0A096LNJ9 63 aa9.97□□□□□ -0.81
USP40-212ENST00000473191 FABP9Q0Z7S8 132 aa9.97□□□□□ -0.81
USP40-212ENST00000473191 COX7B2Q8TF08 81 aa9.97□□□□□ -0.81
USP40-212ENST00000473191 RAB5BP61020 215 aa9.96□□□□□ -0.82
USP40-212ENST00000473191 PDZD11Q5EBL8 140 aa9.96□□□□□ -0.82
USP40-212ENST00000473191 ZNF861PO60384 105 aa9.95□□□□□ -0.82
USP40-212ENST00000473191 TRGC2P03986 189 aa9.95□□□□□ -0.82
USP40-212ENST00000473191 PMVKQ15126 192 aa9.95□□□□□ -0.82
USP40-212ENST00000473191 FA2HQ7L5A8 372 aa9.95□□□□□ -0.82
USP40-212ENST00000473191 MRPL55Q7Z7F7 128 aaKnown RBP9.95□□□□□ -0.82
USP40-212ENST00000473191 RPL37AP8A6NKH3 93 aa9.94□□□□□ -0.82
USP40-212ENST00000473191 CXCL5P42830 114 aa9.94□□□□□ -0.82
USP40-212ENST00000473191 PMCHL1Q16048 86 aa9.94□□□□□ -0.82
USP40-212ENST00000473191 IGLV1-50A0A075B6I6 118 aa9.93□□□□□ -0.82
USP40-212ENST00000473191 LINC00167Q96N53 147 aa9.93□□□□□ -0.82
USP40-212ENST00000473191 GAGE10A6NGK3 116 aa9.92□□□□□ -0.82
USP40-212ENST00000473191 NUPR1O60356 82 aa9.91□□□□□ -0.82
USP40-212ENST00000473191 LBHQ53QV2 105 aaPredicted RBP9.91□□□□□ -0.82
USP40-212ENST00000473191 C18orf32Q8TCD1 76 aa9.91□□□□□ -0.82
USP40-212ENST00000473191 TP73-AS1Q9UF72 201 aa9.91□□□□□ -0.82
USP40-212ENST00000473191 IGLC3P0DOY3 106 aa9.9□□□□□ -0.82
USP40-212ENST00000473191 NDUFA6P56556 154 aa9.9□□□□□ -0.82
USP40-212ENST00000473191 TMA7Q9Y2S6 64 aaKnown RBP9.9□□□□□ -0.82
USP40-212ENST00000473191 A0A087X002 238 aa9.89□□□□□ -0.83
USP40-212ENST00000473191 ZNF22P17026 224 aaPredicted RBP9.89□□□□□ -0.83
USP40-212ENST00000473191 LINC01549A6NIU2 74 aa9.88□□□□□ -0.83
USP40-212ENST00000473191 BCE1O60756 84 aa9.88□□□□□ -0.83
USP40-212ENST00000473191 ANAPC11Q9NYG5 84 aa9.88□□□□□ -0.83
USP40-212ENST00000473191 IGLV5-39A0A0G2JS06 123 aa9.87□□□□□ -0.83
USP40-212ENST00000473191 LINC00614P0C842 121 aa9.87□□□□□ -0.83
USP40-212ENST00000473191 PFN2P35080 140 aa9.87□□□□□ -0.83
USP40-212ENST00000473191 IGLV5-37A0A075B6J1 123 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BKO60814 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BJP06899 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BOP23527 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BBP33778 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BDP58876 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BCP62807 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST2H2BEQ16778 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.86□□□□□ -0.83
USP40-212ENST00000473191 Q8NDZ9 215 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BHQ93079 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BNQ99877 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 HIST1H2BMQ99879 126 aa9.86□□□□□ -0.83
USP40-212ENST00000473191 H3BRM9 83 aa9.85□□□□□ -0.83
USP40-212ENST00000473191 S100A6P06703 90 aa9.85□□□□□ -0.83
USP40-212ENST00000473191 ZNF625Q96I27 306 aaPredicted RBP9.85□□□□□ -0.83
USP40-212ENST00000473191 IGKV2-28A0A075B6P5 120 aa9.84□□□□□ -0.83
USP40-212ENST00000473191 C11orf86A6NJI1 115 aa9.84□□□□□ -0.83
USP40-212ENST00000473191 ATP5LO75964 103 aa9.84□□□□□ -0.83
USP40-212ENST00000473191 IGKV2D-28P01615 120 aa9.84□□□□□ -0.83
USP40-212ENST00000473191 HBDP02042 147 aa9.84□□□□□ -0.83
USP40-212ENST00000473191 RPL13AP40429 203 aaKnown RBP9.84□□□□□ -0.83
USP40-212ENST00000473191 KRTAP13-1Q8IUC0 172 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms