RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 CPAMD8Q8IZJ3 1885 aa6.55□□□□□ -1.36
NIPBL-202ENST00000448238 WDR87Q6ZQQ6 2873 aa6.55□□□□□ -1.36
NIPBL-202ENST00000448238 LINC00482Q8N8I6 264 aa6.55□□□□□ -1.36
NIPBL-202ENST00000448238 PIEZO2Q9H5I5 2752 aa6.55□□□□□ -1.36
NIPBL-202ENST00000448238 C6orf223Q8N319 242 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 PROK2Q9HC23 129 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 TSHBP01222 138 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 LINC01600Q96MT4 127 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 IGLV5-52A0A0A0MRZ9 124 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 RSPO1Q2MKA7 263 aaPredicted RBP6.54□□□□□ -1.36
NIPBL-202ENST00000448238 IGLV2-18A0A075B6J9 118 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 KTN1-AS1Q86SY8 53 aa6.54□□□□□ -1.36
NIPBL-202ENST00000448238 LY6G6CO95867 125 aa6.53□□□□□ -1.36
NIPBL-202ENST00000448238 RITA1Q96K30 269 aa6.53□□□□□ -1.36
NIPBL-202ENST00000448238 NHSL1Q5SYE7 1610 aa6.53□□□□□ -1.36
NIPBL-202ENST00000448238 DMBT1Q9UGM3 2413 aaPredicted RBP6.53□□□□□ -1.36
NIPBL-202ENST00000448238 C4orf26Q17RF5 130 aa6.53□□□□□ -1.36
NIPBL-202ENST00000448238 ZFP36P26651 326 aaKnown RBP6.53□□□□□ -1.36
NIPBL-202ENST00000448238 IGLV1-47P01700 117 aa6.53□□□□□ -1.36
NIPBL-202ENST00000448238 ELOF1P60002 83 aaKnown RBP6.53□□□□□ -1.36
NIPBL-202ENST00000448238 CDC42SE2Q9NRR3 84 aa6.53□□□□□ -1.36
NIPBL-202ENST00000448238 IGLV8-61A0A075B6I0 122 aa6.52□□□□□ -1.37
NIPBL-202ENST00000448238 LINC01556Q5JQF7 62 aa6.52□□□□□ -1.37
NIPBL-202ENST00000448238 COL18A1P39060 1754 aa6.52□□□□□ -1.37
NIPBL-202ENST00000448238 BBC3Q96PG8 261 aaPredicted RBP6.52□□□□□ -1.37
NIPBL-202ENST00000448238 LCA10Q71F78 164 aa6.51□□□□□ -1.37
NIPBL-202ENST00000448238 VWCEQ96DN2 955 aa6.51□□□□□ -1.37
NIPBL-202ENST00000448238 FSTL3O95633 263 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 GDF5OSQ5U4N7 250 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 FAM215AQ9Y5M1 114 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 FHL2Q14192 279 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 M0R2N4 97 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 NHLRC4P0CG21 123 aaPredicted RBP6.5□□□□□ -1.37
NIPBL-202ENST00000448238 DEFB1P60022 68 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 A0A087WYN8 130 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 Q6ZS46 218 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 Q9UF83 564 aa6.5□□□□□ -1.37
NIPBL-202ENST00000448238 C19orf84I3L1E1 186 aa6.49□□□□□ -1.37
NIPBL-202ENST00000448238 C9orf116Q5BN46 136 aaPredicted RBP6.49□□□□□ -1.37
NIPBL-202ENST00000448238 LINC01561Q8N1V8 128 aa6.49□□□□□ -1.37
NIPBL-202ENST00000448238 POLR2KP53803 58 aaKnown RBP6.49□□□□□ -1.37
NIPBL-202ENST00000448238 LINC00313P59037 77 aa6.49□□□□□ -1.37
NIPBL-202ENST00000448238 A0A0A0MQY5 61 aa6.48□□□□□ -1.37
NIPBL-202ENST00000448238 COL5A3P25940 1745 aaPredicted RBP6.48□□□□□ -1.37
NIPBL-202ENST00000448238 LOC101927531A0A1B0GV80 90 aa6.48□□□□□ -1.37
NIPBL-202ENST00000448238 LINC00846Q9NV44 126 aa6.48□□□□□ -1.37
NIPBL-202ENST00000448238 SMIM29Q86T20 159 aa6.48□□□□□ -1.37
NIPBL-202ENST00000448238 IGLV2-8P01709 118 aa6.48□□□□□ -1.37
NIPBL-202ENST00000448238 ANKRD17O75179 2603 aaKnown RBP6.48□□□□□ -1.37
NIPBL-202ENST00000448238 FRMD6-AS1P0C7T7 363 aa6.48□□□□□ -1.37
NIPBL-202ENST00000448238 CNFNQ9BYD5 112 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 ZNF503-AS2A6NEH8 195 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 UNQ6190/PRO20217Q6UXQ8 127 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 EPM2AB3EWF7 344 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 MIR22HGQ0VDD5 57 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 KIAA0087Q14695 138 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 DEFB116Q30KQ4 102 aa6.47□□□□□ -1.37
NIPBL-202ENST00000448238 C11orf71Q6IPW1 123 aa6.46□□□□□ -1.37
NIPBL-202ENST00000448238 WDR90Q96KV7 1748 aa6.46□□□□□ -1.38
NIPBL-202ENST00000448238 CDC42SE1Q9NRR8 79 aa6.46□□□□□ -1.38
NIPBL-202ENST00000448238 APLNQ9ULZ1 77 aa6.46□□□□□ -1.38
NIPBL-202ENST00000448238 CHD8Q9HCK8 2581 aa6.45□□□□□ -1.38
NIPBL-202ENST00000448238 SMIM1B2RUZ4 78 aa6.45□□□□□ -1.38
NIPBL-202ENST00000448238 KLLNB2CW77 178 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 COL11A2P13942 1736 aaPredicted RBP6.44□□□□□ -1.38
NIPBL-202ENST00000448238 IGIPA6NJ69 53 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 IGLV2-14P01704 120 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 LINC00242Q5T6M2 205 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 Q6YL49 198 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 A0A1B0GUV1 79 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 LINC00483Q53H64 154 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 C9orf129Q5T035 196 aaKnown RBP6.44□□□□□ -1.38
NIPBL-202ENST00000448238 Q8N7P7 452 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 C8orf17Q9NRJ1 99 aa6.44□□□□□ -1.38
NIPBL-202ENST00000448238 KRTAP27-1Q3LI81 207 aa6.43□□□□□ -1.38
NIPBL-202ENST00000448238 FAM229AH3BQW9 127 aa6.43□□□□□ -1.38
NIPBL-202ENST00000448238 CRIP1P50238 77 aa6.43□□□□□ -1.38
NIPBL-202ENST00000448238 MOBPQ13875 183 aa6.43□□□□□ -1.38
NIPBL-202ENST00000448238 LINC00574Q9H8X3 128 aa6.43□□□□□ -1.38
NIPBL-202ENST00000448238 LY6G6DO95868 133 aa6.42□□□□□ -1.38
NIPBL-202ENST00000448238 PROK1P58294 105 aa6.42□□□□□ -1.38
NIPBL-202ENST00000448238 SPACA4Q8TDM5 124 aa6.42□□□□□ -1.38
NIPBL-202ENST00000448238 PLA2G2EQ9NZK7 142 aa6.42□□□□□ -1.38
NIPBL-202ENST00000448238 C11orf72Q8NBR9 251 aa6.41□□□□□ -1.38
NIPBL-202ENST00000448238 IGF2RP11717 2491 aa6.41□□□□□ -1.38
NIPBL-202ENST00000448238 FBXL19-AS1Q494R0 122 aa6.4□□□□□ -1.38
NIPBL-202ENST00000448238 COX6A2Q02221 97 aa6.4□□□□□ -1.39
NIPBL-202ENST00000448238 PRR15Q8IV56 129 aa6.4□□□□□ -1.39
NIPBL-202ENST00000448238 PRR3P79522 188 aaKnown RBP6.4□□□□□ -1.39
NIPBL-202ENST00000448238 LYPD5Q6UWN5 251 aa6.39□□□□□ -1.39
NIPBL-202ENST00000448238 C1orf134Q5TEV5 83 aa6.38□□□□□ -1.39
NIPBL-202ENST00000448238 C11orf1Q9H5F2 150 aa6.38□□□□□ -1.39
NIPBL-202ENST00000448238 PSMG3-AS1Q96PY0 264 aa6.38□□□□□ -1.39
NIPBL-202ENST00000448238 IGFL2Q6UWQ7 119 aa6.38□□□□□ -1.39
NIPBL-202ENST00000448238 COA5Q86WW8 74 aa6.38□□□□□ -1.39
NIPBL-202ENST00000448238 GRNP28799 593 aaKnown RBP6.37□□□□□ -1.39
NIPBL-202ENST00000448238 Q6ZSV7 163 aa6.37□□□□□ -1.39
NIPBL-202ENST00000448238 SPATA3Q8NHX4 192 aa6.37□□□□□ -1.39
NIPBL-202ENST00000448238 SMCR5Q8TEV8 140 aa6.37□□□□□ -1.39
NIPBL-202ENST00000448238 IGLV2-11P01706 119 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms