RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IGLV1-50A0A075B6I6 118 aa5.8□□□□□ -1.48
HMGB1-203ENST00000341423 TEX49A0A1B0GTD5 131 aa5.8□□□□□ -1.48
HMGB1-203ENST00000341423 hDV103S1A0JD37 113 aa5.8□□□□□ -1.48
HMGB1-203ENST00000341423 M0QY20 66 aa5.8□□□□□ -1.48
HMGB1-203ENST00000341423 PRLHP81277 87 aa5.8□□□□□ -1.48
HMGB1-203ENST00000341423 C22orf24Q9Y442 160 aa5.8□□□□□ -1.48
HMGB1-203ENST00000341423 JMJD7-PLA2G4BH0Y9G9 81 aa5.79□□□□□ -1.48
HMGB1-203ENST00000341423 NUP210LQ5VU65 1888 aa5.79□□□□□ -1.48
HMGB1-203ENST00000341423 TMEM256-PLSCR3K7ERE1 68 aa5.79□□□□□ -1.48
HMGB1-203ENST00000341423 BPY2O14599 106 aa5.79□□□□□ -1.48
HMGB1-203ENST00000341423 ZNF73O43830 326 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-203ENST00000341423 MT-ATP8P03928 68 aa5.79□□□□□ -1.48
HMGB1-203ENST00000341423 Q9UF83 564 aa5.79□□□□□ -1.48
HMGB1-203ENST00000341423 Q6ZRU5 148 aa5.78□□□□□ -1.48
HMGB1-203ENST00000341423 LINC01545Q5VT33 79 aa5.78□□□□□ -1.48
HMGB1-203ENST00000341423 CDKN2A-AS1Q9UH64 79 aa5.78□□□□□ -1.48
HMGB1-203ENST00000341423 IGHV6-1A0A0B4J1U7 121 aa5.78□□□□□ -1.48
HMGB1-203ENST00000341423 HSD52Q0P140 79 aa5.78□□□□□ -1.48
HMGB1-203ENST00000341423 PHF5AQ7RTV0 110 aaKnown RBP5.77□□□□□ -1.49
HMGB1-203ENST00000341423 SMCR5Q8TEV8 140 aa5.77□□□□□ -1.49
HMGB1-203ENST00000341423 PCNTO95613 3336 aa5.77□□□□□ -1.49
HMGB1-203ENST00000341423 Q8NBF4 154 aa5.76□□□□□ -1.49
HMGB1-203ENST00000341423 C6orf99Q4VX62 202 aa5.76□□□□□ -1.49
HMGB1-203ENST00000341423 USP34Q70CQ2 3546 aa5.76□□□□□ -1.49
HMGB1-203ENST00000341423 C14orf144Q96I85 54 aa5.75□□□□□ -1.49
HMGB1-203ENST00000341423 FAM167A-AS1Q96KT0 104 aa5.75□□□□□ -1.49
HMGB1-203ENST00000341423 CENPFP49454 3210 aa5.75□□□□□ -1.49
HMGB1-203ENST00000341423 CYYR1Q96J86 154 aa5.75□□□□□ -1.49
HMGB1-203ENST00000341423 TENM4Q6N022 2769 aa5.75□□□□□ -1.49
HMGB1-203ENST00000341423 CDC42SE2Q9NRR3 84 aa5.75□□□□□ -1.49
HMGB1-203ENST00000341423 A0A1B0GXF2 115 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 BCE1O60756 84 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 PRO1854Q9UHT4 67 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 IGLV5-37A0A075B6J1 123 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 RETNLBQ9BQ08 111 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 TRBV24-1A0A075B6N3 115 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 LINC00242Q5T6M2 205 aa5.74□□□□□ -1.49
HMGB1-203ENST00000341423 ZNF726P1Q15940 193 aa5.73□□□□□ -1.49
HMGB1-203ENST00000341423 CCKP06307 115 aa5.73□□□□□ -1.49
HMGB1-203ENST00000341423 MRPS36P82909 103 aaKnown RBP5.73□□□□□ -1.49
HMGB1-203ENST00000341423 SCXQ7RTU7 201 aa5.73□□□□□ -1.49
HMGB1-203ENST00000341423 ZNF80P51504 273 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-203ENST00000341423 B5MCH6 92 aa5.72□□□□□ -1.49
HMGB1-203ENST00000341423 PYGO1Q9Y3Y4 419 aa5.72□□□□□ -1.49
HMGB1-203ENST00000341423 SYS1-DBNDD2H3BUS1 97 aa5.72□□□□□ -1.49
HMGB1-203ENST00000341423 J3KT08 172 aa5.72□□□□□ -1.49
HMGB1-203ENST00000341423 C11orf1Q9H5F2 150 aa5.72□□□□□ -1.49
HMGB1-203ENST00000341423 TRBV6-5A0A0K0K1A5 114 aa5.71□□□□□ -1.49
HMGB1-203ENST00000341423 TOMM6Q96B49 74 aa5.71□□□□□ -1.49
HMGB1-203ENST00000341423 IGLV4-60A0A075B6I1 120 aa5.71□□□□□ -1.49
HMGB1-203ENST00000341423 Q96NJ1 140 aa5.71□□□□□ -1.5
HMGB1-203ENST00000341423 RNASE3P12724 160 aaKnown RBP5.71□□□□□ -1.5
HMGB1-203ENST00000341423 Q8N9L7 120 aa5.71□□□□□ -1.5
HMGB1-203ENST00000341423 UTP20O75691 2785 aaKnown RBP5.71□□□□□ -1.5
HMGB1-203ENST00000341423 IGKV2D-30A0A075B6S6 120 aa5.7□□□□□ -1.5
HMGB1-203ENST00000341423 ZNF861PO60384 105 aa5.7□□□□□ -1.5
HMGB1-203ENST00000341423 IGKV2-30P06310 120 aa5.7□□□□□ -1.5
HMGB1-203ENST00000341423 SSBP3-AS1Q7Z2R9 100 aa5.7□□□□□ -1.5
HMGB1-203ENST00000341423 IGLV4-3A0A075B6K6 122 aa5.7□□□□□ -1.5
HMGB1-203ENST00000341423 TMEM223A0PJW6 202 aa5.7□□□□□ -1.5
HMGB1-203ENST00000341423 C11orf86A6NJI1 115 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 CRIP3Q6Q6R5 217 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 EML5Q05BV3 1969 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 TSHBP01222 138 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 Q6ZQY7 126 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 CEP350Q5VT06 3117 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 PTH2Q96A98 100 aa5.69□□□□□ -1.5
HMGB1-203ENST00000341423 IGLV7-43P04211 117 aa5.68□□□□□ -1.5
HMGB1-203ENST00000341423 TRBV27A0A0K0K1C4 114 aa5.68□□□□□ -1.5
HMGB1-203ENST00000341423 K7ERU9 68 aa5.68□□□□□ -1.5
HMGB1-203ENST00000341423 H3BUT2 72 aa5.68□□□□□ -1.5
HMGB1-203ENST00000341423 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-203ENST00000341423 LINC00167Q96N53 147 aa5.67□□□□□ -1.5
HMGB1-203ENST00000341423 V9GYV3 84 aa5.67□□□□□ -1.5
HMGB1-203ENST00000341423 TRBV10-3A0A0K0K1G6 114 aa5.67□□□□□ -1.5
HMGB1-203ENST00000341423 C9orf92A6NGG3 77 aa5.67□□□□□ -1.5
HMGB1-203ENST00000341423 ZNF106Q9H2Y7 1883 aaKnown RBP5.67□□□□□ -1.5
HMGB1-203ENST00000341423 CFC1BP0CG36 223 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 CFC1P0CG37 223 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 IGLC3P0DOY3 106 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 LINC01561Q8N1V8 128 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 CPAMD8Q8IZJ3 1885 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 SPINK1P00995 79 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 TMEM258P61165 79 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 MRPL52Q86TS9 123 aaKnown RBP5.66□□□□□ -1.5
HMGB1-203ENST00000341423 WFDC13Q8IUB5 93 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 ZNF292O60281 2723 aa5.66□□□□□ -1.5
HMGB1-203ENST00000341423 PRR9Q5T870 116 aa5.65□□□□□ -1.5
HMGB1-203ENST00000341423 SERP2Q8N6R1 65 aa5.65□□□□□ -1.51
HMGB1-203ENST00000341423 C18orf32Q8TCD1 76 aa5.65□□□□□ -1.51
HMGB1-203ENST00000341423 Q8N1X5 172 aa5.64□□□□□ -1.51
HMGB1-203ENST00000341423 GVQW2A0A096LPI5 108 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-203ENST00000341423 LINC00313P59037 77 aa5.64□□□□□ -1.51
HMGB1-203ENST00000341423 A0A087WSZ3 146 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 IGHV3OR16-9A0A0B4J2B5 98 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 BPTFQ12830 3046 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 C20orf197Q8N268 126 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 HIST1H2BLQ99880 126 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 TP73-AS1Q9UF72 201 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 CSDC2Q9Y534 153 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms