RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PRO0255Q9UI72 69 aa13□□□□□ -0.33
CPSF3-201ENST00000238112 GAGE2AQ6NT46 116 aa12.99□□□□□ -0.33
CPSF3-201ENST00000238112 CLPSL2Q6UWE3 100 aa12.99□□□□□ -0.33
CPSF3-201ENST00000238112 Q8IZM0 81 aa12.99□□□□□ -0.33
CPSF3-201ENST00000238112 SS18L2Q9UHA2 77 aa12.99□□□□□ -0.33
CPSF3-201ENST00000238112 X6R8D5 127 aa12.99□□□□□ -0.33
CPSF3-201ENST00000238112 A0A096LPF7 62 aa12.98□□□□□ -0.33
CPSF3-201ENST00000238112 LINC00482Q8N8I6 264 aa12.98□□□□□ -0.33
CPSF3-201ENST00000238112 SMIM9A6NGZ8 99 aa12.97□□□□□ -0.33
CPSF3-201ENST00000238112 KRTAP10-3P60369 221 aa12.96□□□□□ -0.33
CPSF3-201ENST00000238112 ATP5G1P05496 136 aa12.96□□□□□ -0.34
CPSF3-201ENST00000238112 PDZD2O15018 2839 aa12.96□□□□□ -0.34
CPSF3-201ENST00000238112 LECT2O14960 151 aa12.95□□□□□ -0.34
CPSF3-201ENST00000238112 SDIM1Q6ZPB5 146 aa12.95□□□□□ -0.34
CPSF3-201ENST00000238112 FAM236AA0A1B0GUQ0 79 aa12.95□□□□□ -0.34
CPSF3-201ENST00000238112 FAM236BA0A1B0GV22 79 aa12.95□□□□□ -0.34
CPSF3-201ENST00000238112 LINC01561Q8N1V8 128 aa12.94□□□□□ -0.34
CPSF3-201ENST00000238112 ANK3Q12955 4377 aaKnown RBP12.94□□□□□ -0.34
CPSF3-201ENST00000238112 TENM4Q6N022 2769 aa12.94□□□□□ -0.34
CPSF3-201ENST00000238112 LY6G6DO95868 133 aa12.93□□□□□ -0.34
CPSF3-201ENST00000238112 LYRM9A8MSI8 78 aa12.92□□□□□ -0.34
CPSF3-201ENST00000238112 FN1P02751 2386 aaKnown RBP12.92□□□□□ -0.34
CPSF3-201ENST00000238112 LINC00269Q8N2A0 174 aa12.91□□□□□ -0.34
CPSF3-201ENST00000238112 C14orf132Q9NPU4 83 aa12.91□□□□□ -0.34
CPSF3-201ENST00000238112 CFAP161Q6P656 301 aa12.9□□□□□ -0.34
CPSF3-201ENST00000238112 C9orf129Q5T035 196 aaKnown RBP12.9□□□□□ -0.34
CPSF3-201ENST00000238112 CD164L2Q6UWJ8 174 aa12.9□□□□□ -0.34
CPSF3-201ENST00000238112 SMR3AQ99954 134 aa12.9□□□□□ -0.34
CPSF3-201ENST00000238112 ANGP03950 147 aaKnown RBP12.88□□□□□ -0.35
CPSF3-201ENST00000238112 CXCL5P42830 114 aa12.88□□□□□ -0.35
CPSF3-201ENST00000238112 OBSCN-AS1Q96MR7 158 aa12.88□□□□□ -0.35
CPSF3-201ENST00000238112 DEFB4AO15263 64 aa12.88□□□□□ -0.35
CPSF3-201ENST00000238112 SLPIP03973 132 aa12.88□□□□□ -0.35
CPSF3-201ENST00000238112 DEFB135Q30KP9 77 aa12.88□□□□□ -0.35
CPSF3-201ENST00000238112 CHCHD10Q8WYQ3 142 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-201ENST00000238112 ORMDL1Q9P0S3 153 aa12.88□□□□□ -0.35
CPSF3-201ENST00000238112 C9orf66Q5T8R8 295 aa12.87□□□□□ -0.35
CPSF3-201ENST00000238112 IGLV10-54A0A075B6I4 117 aa12.87□□□□□ -0.35
CPSF3-201ENST00000238112 COX17Q14061 63 aa12.87□□□□□ -0.35
CPSF3-201ENST00000238112 KLK5Q9Y337 293 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-201ENST00000238112 REG3AQ06141 175 aa12.86□□□□□ -0.35
CPSF3-201ENST00000238112 KIAA0087Q14695 138 aa12.86□□□□□ -0.35
CPSF3-201ENST00000238112 GCN1Q92616 2671 aaKnown RBP12.85□□□□□ -0.35
CPSF3-201ENST00000238112 NCR3O14931 201 aa12.85□□□□□ -0.35
CPSF3-201ENST00000238112 HIVEP2P31629 2446 aa12.85□□□□□ -0.35
CPSF3-201ENST00000238112 DAD1P61803 113 aa12.85□□□□□ -0.35
CPSF3-201ENST00000238112 PRR3P79522 188 aaKnown RBP12.85□□□□□ -0.35
CPSF3-201ENST00000238112 ITPR2Q14571 2701 aa12.85□□□□□ -0.35
CPSF3-201ENST00000238112 NDUFC2O95298 119 aa12.84□□□□□ -0.35
CPSF3-201ENST00000238112 Q8N3U1 123 aa12.84□□□□□ -0.35
CPSF3-201ENST00000238112 J3QKU1 62 aa12.83□□□□□ -0.36
CPSF3-201ENST00000238112 APOC4P55056 127 aa12.83□□□□□ -0.36
CPSF3-201ENST00000238112 IGHV4-28A0A0C4DH34 117 aa12.83□□□□□ -0.36
CPSF3-201ENST00000238112 TMEM126AQ9H061 195 aa12.83□□□□□ -0.36
CPSF3-201ENST00000238112 SPATA3Q8NHX4 192 aa12.82□□□□□ -0.36
CPSF3-201ENST00000238112 NBEAL2Q6ZNJ1 2754 aa12.82□□□□□ -0.36
CPSF3-201ENST00000238112 A0A1B0GX51 115 aa12.82□□□□□ -0.36
CPSF3-201ENST00000238112 NANOS2P60321 138 aaKnown RBP12.82□□□□□ -0.36
CPSF3-201ENST00000238112 C9orf116Q5BN46 136 aaPredicted RBP12.8□□□□□ -0.36
CPSF3-201ENST00000238112 Q8N814 137 aa12.8□□□□□ -0.36
CPSF3-201ENST00000238112 LINC00167Q96N53 147 aa12.79□□□□□ -0.36
CPSF3-201ENST00000238112 LINC00846Q9NV44 126 aa12.79□□□□□ -0.36
CPSF3-201ENST00000238112 CELA1Q9UNI1 258 aa12.78□□□□□ -0.36
CPSF3-201ENST00000238112 UNC79Q9P2D8 2635 aa12.77□□□□□ -0.37
CPSF3-201ENST00000238112 JMJD7-PLA2G4BH0Y9G9 81 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 TMEM256-PLSCR3K7ERE1 68 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 HTN3P15516 51 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 Q6JHZ5 121 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 MIFP14174 115 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 S100A7L2Q5SY68 101 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 C3orf22Q8N5N4 141 aa12.76□□□□□ -0.37
CPSF3-201ENST00000238112 IGKV3D-7A0A0C4DH55 119 aa12.75□□□□□ -0.37
CPSF3-201ENST00000238112 SPAG11BQ08648 103 aa12.75□□□□□ -0.37
CPSF3-201ENST00000238112 Q8NAQ8 132 aa12.75□□□□□ -0.37
CPSF3-201ENST00000238112 CCKP06307 115 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 UQCRQO14949 82 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 SPART-AS1P0CW21 52 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 C6orf99Q4VX62 202 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 LELP1Q5T871 98 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 C9orf153Q5TBE3 101 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 C3orf56Q8N813 242 aa12.74□□□□□ -0.37
CPSF3-201ENST00000238112 HIST1H4AP62805 103 aaKnown RBP12.72□□□□□ -0.37
CPSF3-201ENST00000238112 UNQ6190/PRO20217Q6UXQ8 127 aa12.72□□□□□ -0.37
CPSF3-201ENST00000238112 C6orf223Q8N319 242 aa12.72□□□□□ -0.37
CPSF3-201ENST00000238112 Q8NDZ9 215 aa12.72□□□□□ -0.37
CPSF3-201ENST00000238112 ATOX1O00244 68 aa12.72□□□□□ -0.37
CPSF3-201ENST00000238112 C10orf25Q5T742 122 aa12.72□□□□□ -0.37
CPSF3-201ENST00000238112 FASNP49327 2511 aaKnown RBP12.72□□□□□ -0.37
CPSF3-201ENST00000238112 VWFP04275 2813 aa12.71□□□□□ -0.37
CPSF3-201ENST00000238112 MUC7Q8TAX7 377 aa12.71□□□□□ -0.37
CPSF3-201ENST00000238112 KLK12Q9UKR0 248 aa12.7□□□□□ -0.38
CPSF3-201ENST00000238112 INAFM1C9JVW0 142 aa12.7□□□□□ -0.38
CPSF3-201ENST00000238112 LINC00526Q96FQ7 95 aa12.7□□□□□ -0.38
CPSF3-201ENST00000238112 CYSRT1A8MQ03 144 aa12.69□□□□□ -0.38
CPSF3-201ENST00000238112 COX7CP15954 63 aa12.68□□□□□ -0.38
CPSF3-201ENST00000238112 HELZ2Q9BYK8 2649 aaKnown RBP12.68□□□□□ -0.38
CPSF3-201ENST00000238112 RPL18AQ02543 176 aaKnown RBP12.68□□□□□ -0.38
CPSF3-201ENST00000238112 LINC00575Q6W349 94 aa12.68□□□□□ -0.38
CPSF3-201ENST00000238112 A0A0J9YWU9 116 aa12.67□□□□□ -0.38
CPSF3-201ENST00000238112 IGHV4-30-4P0DP06 118 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms