RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NFE4Q86UQ8 179 aa9.98□□□□□ -0.81
TRIM28-207ENST00000597136 CHTOPQ9Y3Y2 248 aaKnown RBP9.98□□□□□ -0.81
TRIM28-207ENST00000597136 IGLV10-54A0A075B6I4 117 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 TRAV8-4A0A0B4J246 113 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 A0A0J9YXV3 536 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 LINC00242Q5T6M2 205 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 FAM19A3Q7Z5A8 133 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 IGLV4-69A0A075B6H9 119 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 LINC01545Q5VT33 79 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 MAPKAPK5-AS1Q8N8E1 139 aa9.97□□□□□ -0.81
TRIM28-207ENST00000597136 CHCHD10Q8WYQ3 142 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-207ENST00000597136 MRPL35Q9NZE8 188 aaKnown RBP9.97□□□□□ -0.81
TRIM28-207ENST00000597136 F8VRH5 84 aa9.96□□□□□ -0.82
TRIM28-207ENST00000597136 PMCHL2Q9BQD1 86 aa9.96□□□□□ -0.82
TRIM28-207ENST00000597136 LOC105371267A0A1B0GV96 52 aa9.95□□□□□ -0.82
TRIM28-207ENST00000597136 TINCRA0A1B0GVN0 87 aa9.95□□□□□ -0.82
TRIM28-207ENST00000597136 IGLC3P0DOY3 106 aa9.95□□□□□ -0.82
TRIM28-207ENST00000597136 XCL1P47992 114 aa9.95□□□□□ -0.82
TRIM28-207ENST00000597136 COX6A2Q02221 97 aa9.95□□□□□ -0.82
TRIM28-207ENST00000597136 SEC11AP67812 179 aa9.94□□□□□ -0.82
TRIM28-207ENST00000597136 C1orf43Q9BWL3 253 aa9.94□□□□□ -0.82
TRIM28-207ENST00000597136 IGKV2D-24A0A075B6R9 120 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 C20orf202A1L168 122 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 C11orf86A6NJI1 115 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 PSCAO43653 123 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 FUSP35637 526 aaKnown RBP eCLIP9.93□□□□□ -0.82
TRIM28-207ENST00000597136 HERVK_113P63121 156 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 KRTAP26-1Q6PEX3 210 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 CD164L2Q6UWJ8 174 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 CHAC1Q9BUX1 264 aa9.93□□□□□ -0.82
TRIM28-207ENST00000597136 GEMIN7Q9H840 131 aaKnown RBP9.93□□□□□ -0.82
TRIM28-207ENST00000597136 A0A087WTM6 91 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 IGHV3OR16-9A0A0B4J2B5 98 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 LRCOL1A6NCL2 159 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 DPM2O94777 84 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 PLNP26678 52 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 AKR1D1P51857 326 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 WFDC2Q14508 124 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 RMI2Q96E14 147 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 GAGE12HA6NDE8 117 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 IGKCP01834 107 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 KRTAP10-2P60368 255 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 FOXI1Q12951 378 aa9.92□□□□□ -0.82
TRIM28-207ENST00000597136 IGLV5-45A0A087WSX0 123 aa9.91□□□□□ -0.82
TRIM28-207ENST00000597136 SCGB1D1O95968 90 aa9.91□□□□□ -0.82
TRIM28-207ENST00000597136 LINC00469Q8N7U9 141 aa9.91□□□□□ -0.82
TRIM28-207ENST00000597136 TM2D2Q9BX73 214 aa9.91□□□□□ -0.82
TRIM28-207ENST00000597136 CDKN2A-AS1Q9UH64 79 aa9.91□□□□□ -0.82
TRIM28-207ENST00000597136 LECT2O14960 151 aa9.9□□□□□ -0.82
TRIM28-207ENST00000597136 ZNF22P17026 224 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-207ENST00000597136 COX11Q9Y6N1 276 aa9.9□□□□□ -0.82
TRIM28-207ENST00000597136 JOSD1Q15040 202 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-207ENST00000597136 C5orf38Q86SI9 138 aa9.89□□□□□ -0.83
TRIM28-207ENST00000597136 DNAH5Q8TE73 4624 aa9.89□□□□□ -0.83
TRIM28-207ENST00000597136 A0A087WZ39 114 aa9.88□□□□□ -0.83
TRIM28-207ENST00000597136 COX7A2LO14548 114 aa9.88□□□□□ -0.83
TRIM28-207ENST00000597136 TMEM170BQ5T4T1 132 aa9.88□□□□□ -0.83
TRIM28-207ENST00000597136 ATOH7Q8N100 152 aa9.88□□□□□ -0.83
TRIM28-207ENST00000597136 BIRC6Q9NR09 4857 aa9.87□□□□□ -0.83
TRIM28-207ENST00000597136 H3BRM9 83 aa9.87□□□□□ -0.83
TRIM28-207ENST00000597136 PYY3Q5JQD4 70 aa9.87□□□□□ -0.83
TRIM28-207ENST00000597136 DYNC1H1Q14204 4646 aaKnown RBP9.85□□□□□ -0.83
TRIM28-207ENST00000597136 SPINK8P0C7L1 97 aa9.85□□□□□ -0.83
TRIM28-207ENST00000597136 MALP21145 153 aa9.85□□□□□ -0.83
TRIM28-207ENST00000597136 LINC01561Q8N1V8 128 aa9.85□□□□□ -0.83
TRIM28-207ENST00000597136 TMEM223A0PJW6 202 aa9.84□□□□□ -0.83
TRIM28-207ENST00000597136 EREGO14944 169 aa9.84□□□□□ -0.83
TRIM28-207ENST00000597136 SMIM1B2RUZ4 78 aa9.84□□□□□ -0.83
TRIM28-207ENST00000597136 STPG4Q8N801 248 aa9.84□□□□□ -0.83
TRIM28-207ENST00000597136 Q8N814 137 aa9.84□□□□□ -0.83
TRIM28-207ENST00000597136 IGHV3-64A0A075B6Q5 118 aa9.82□□□□□ -0.84
TRIM28-207ENST00000597136 IGLV5-39A0A0G2JS06 123 aa9.82□□□□□ -0.84
TRIM28-207ENST00000597136 hDV102S1A0JD36 115 aa9.82□□□□□ -0.84
TRIM28-207ENST00000597136 APOMO95445 188 aa9.82□□□□□ -0.84
TRIM28-207ENST00000597136 MAJINQ3KP22 176 aa9.82□□□□□ -0.84
TRIM28-207ENST00000597136 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-207ENST00000597136 IGHV1-58A0A0C4DH39 117 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 C16orf90A8MZG2 172 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 USP17L23D6RBM5 183 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 HERVK_113P61574 105 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 CFAP161Q6P656 301 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 C15orf56Q8N910 161 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 PGPEP1Q9NXJ5 209 aa9.81□□□□□ -0.84
TRIM28-207ENST00000597136 CDPF1Q6NVV7 123 aa9.8□□□□□ -0.84
TRIM28-207ENST00000597136 ORAOV1Q8WV07 137 aa9.8□□□□□ -0.84
TRIM28-207ENST00000597136 LRP1BQ9NZR2 4599 aa9.8□□□□□ -0.84
TRIM28-207ENST00000597136 SMIM6P0DI80 62 aa9.8□□□□□ -0.84
TRIM28-207ENST00000597136 HSBP1L1C9JCN9 74 aa9.79□□□□□ -0.84
TRIM28-207ENST00000597136 E9PLD3 99 aa9.79□□□□□ -0.84
TRIM28-207ENST00000597136 ANKRD39Q53RE8 183 aa9.79□□□□□ -0.84
TRIM28-207ENST00000597136 GVQW2A0A096LPI5 108 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-207ENST00000597136 LEPROTO15243 131 aa9.78□□□□□ -0.84
TRIM28-207ENST00000597136 KIAA0087Q14695 138 aa9.78□□□□□ -0.84
TRIM28-207ENST00000597136 HIGD2BQ4VC39 106 aa9.78□□□□□ -0.84
TRIM28-207ENST00000597136 NTN5Q8WTR8 489 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-207ENST00000597136 TOMM7Q9P0U1 55 aa9.78□□□□□ -0.84
TRIM28-207ENST00000597136 SPAG11BQ08648 103 aa9.77□□□□□ -0.85
TRIM28-207ENST00000597136 COX7B2Q8TF08 81 aa9.77□□□□□ -0.85
TRIM28-207ENST00000597136 IGKV2D-26A0A0A0MRZ7 120 aa9.76□□□□□ -0.85
TRIM28-207ENST00000597136 IGLV5-52A0A0A0MRZ9 124 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms