RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LITAFQ99732 161 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 RHPN1-AS1Q9BWJ2 59 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 HUWE1Q7Z6Z7 4374 aaKnown RBP5.56□□□□□ -1.52
LIMA1-216ENST00000552909 K7EMT4 169 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 IGLV1-51P01701 117 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 ZFAND2AQ8N6M9 145 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 LINC00477Q96M19 166 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 TENM3Q9P273 2699 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 IGKV3-7A0A075B6H7 116 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 TRBV27A0A0K0K1C4 114 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 F5H697 171 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 NXPH4O95158 308 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 IGHV3-30-3P0DP02 117 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 LINC00315P59091 139 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 DCANP1Q8TF63 244 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 OPRPNQ99935 248 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-216ENST00000552909 TIMM21Q9BVV7 248 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 KIF25-AS1Q9Y6Z4 181 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 STAB2Q8WWQ8 2551 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 ATOX1O00244 68 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 GNRH2O43555 120 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 TRACP01848 142 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 RNASE3P12724 160 aaKnown RBP5.55□□□□□ -1.52
LIMA1-216ENST00000552909 MIAQ16674 131 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 C5orf38Q86SI9 138 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 TMEM61Q8N0U2 210 aa5.55□□□□□ -1.52
LIMA1-216ENST00000552909 A0A0J9YXV3 536 aa5.54□□□□□ -1.52
LIMA1-216ENST00000552909 RNASE4P34096 147 aaKnown RBP5.54□□□□□ -1.52
LIMA1-216ENST00000552909 RHOHQ15669 191 aa5.54□□□□□ -1.52
LIMA1-216ENST00000552909 ADAMTSL4-AS1Q5T5F5 129 aa5.54□□□□□ -1.52
LIMA1-216ENST00000552909 C2orf48Q96LS8 159 aa5.54□□□□□ -1.52
LIMA1-216ENST00000552909 TRBV6-5A0A0K0K1A5 114 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 hADV29S1A0JD25 119 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 TMEM258P61165 79 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 NPC2P61916 151 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 SDIM1Q6ZPB5 146 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 PEMTQ9UBM1 199 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 A0A087WWL8 130 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 DEFB114Q30KQ6 69 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 C20orf173Q96LM9 149 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 NDUFA12Q9UI09 145 aa5.53□□□□□ -1.52
LIMA1-216ENST00000552909 HIST1H4AP62805 103 aaKnown RBP5.52□□□□□ -1.53
LIMA1-216ENST00000552909 DPH3Q96FX2 82 aa5.52□□□□□ -1.53
LIMA1-216ENST00000552909 JPT2Q9H910 190 aa5.52□□□□□ -1.53
LIMA1-216ENST00000552909 IGLV4-3A0A075B6K6 122 aa5.52□□□□□ -1.53
LIMA1-216ENST00000552909 IGHV1-58A0A0C4DH39 117 aa5.52□□□□□ -1.53
LIMA1-216ENST00000552909 C20orf203Q8NBC4 194 aa5.52□□□□□ -1.53
LIMA1-216ENST00000552909 DAZ2Q13117 558 aaKnown RBP5.51□□□□□ -1.53
LIMA1-216ENST00000552909 DAZ4Q86SG3 579 aaKnown RBP5.51□□□□□ -1.53
LIMA1-216ENST00000552909 DAND5Q8N907 189 aa5.51□□□□□ -1.53
LIMA1-216ENST00000552909 DYNLRB2Q8TF09 96 aa5.51□□□□□ -1.53
LIMA1-216ENST00000552909 DAZ3Q9NR90 486 aaKnown RBP5.51□□□□□ -1.53
LIMA1-216ENST00000552909 TRAV12-3A0A0B4J271 114 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 F5H768 121 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 COX7A2LO14548 114 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 INAFM2P0DMQ5 153 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 FAM74A4Q5TZK3 123 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 APRG1Q8IVJ8 170 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 FAM19A4Q96LR4 140 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 SOCS3O14543 225 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 TIMM17BO60830 172 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 MRPS36P82909 103 aaKnown RBP5.5□□□□□ -1.53
LIMA1-216ENST00000552909 RPL18AQ02543 176 aaKnown RBP5.5□□□□□ -1.53
LIMA1-216ENST00000552909 KIR2DL5BQ8NHK3 375 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 B9D2Q9BPU9 175 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 WFDC10AQ9H1F0 79 aa5.5□□□□□ -1.53
LIMA1-216ENST00000552909 IGHV4-30-4P0DP06 118 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 TIRAPP58753 221 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 DEFB1P60022 68 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 VSIG2Q96IQ7 327 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 CYSTM1Q9H1C7 97 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 M0QY20 66 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 BAALC-AS2P0C853 105 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 SERP2Q8N6R1 65 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 DNAH7Q8WXX0 4024 aa5.49□□□□□ -1.53
LIMA1-216ENST00000552909 TRAV13-1A0A0B4J241 112 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 F6UB75 175 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 C4orf26Q17RF5 130 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 FAM222AQ5U5X8 452 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 DSCR8Q96T75 97 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 CSMD3Q7Z407 3707 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 A8MZ25 164 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 K7EQG2 157 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 CIRBPQ14011 172 aaKnown RBP5.48□□□□□ -1.53
LIMA1-216ENST00000552909 HRCT1Q6UXD1 115 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 C19orf73Q9NVV2 129 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 PYGO1Q9Y3Y4 419 aa5.48□□□□□ -1.53
LIMA1-216ENST00000552909 MUC4Q99102 2169 aa5.47□□□□□ -1.53
LIMA1-216ENST00000552909 OXTP01178 125 aa5.47□□□□□ -1.53
LIMA1-216ENST00000552909 SNRPD3P62318 126 aaKnown RBP5.47□□□□□ -1.53
LIMA1-216ENST00000552909 UPK3BQ9BT76 320 aa5.47□□□□□ -1.53
LIMA1-216ENST00000552909 TINCRA0A1B0GVN0 87 aa5.46□□□□□ -1.53
LIMA1-216ENST00000552909 Q5XG85 94 aa5.46□□□□□ -1.53
LIMA1-216ENST00000552909 KLLNB2CW77 178 aa5.46□□□□□ -1.54
LIMA1-216ENST00000552909 DNAL4O96015 105 aa5.46□□□□□ -1.54
LIMA1-216ENST00000552909 LINC00308Q8TCZ7 52 aa5.46□□□□□ -1.54
LIMA1-216ENST00000552909 COPS9Q8WXC6 57 aa5.46□□□□□ -1.54
LIMA1-216ENST00000552909 KMT2CQ8NEZ4 4911 aaKnown RBP5.45□□□□□ -1.54
LIMA1-216ENST00000552909 RBMY1BA6NDE4 496 aaKnown RBP5.45□□□□□ -1.54
LIMA1-216ENST00000552909 RBMY1EA6NEQ0 496 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms