RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 C2CD3Q4AC94 2353 aa12.54□□□□□ -0.4
PTPRF-209ENST00000438120 MRPS12O15235 138 aaKnown RBP12.54□□□□□ -0.4
PTPRF-209ENST00000438120 YPEL4Q96NS1 127 aa12.54□□□□□ -0.4
PTPRF-209ENST00000438120 CEP192Q8TEP8 1941 aa12.54□□□□□ -0.4
PTPRF-209ENST00000438120 NDUFA7O95182 113 aa12.54□□□□□ -0.4
PTPRF-209ENST00000438120 SPTSSBQ8NFR3 76 aa12.54□□□□□ -0.4
PTPRF-209ENST00000438120 IGLV9-49A0A0B4J1Y8 123 aa12.53□□□□□ -0.4
PTPRF-209ENST00000438120 WFDC13Q8IUB5 93 aa12.53□□□□□ -0.4
PTPRF-209ENST00000438120 IGLV4-69A0A075B6H9 119 aa12.52□□□□□ -0.4
PTPRF-209ENST00000438120 UBE2D1P51668 147 aa12.52□□□□□ -0.41
PTPRF-209ENST00000438120 POLR2KP53803 58 aaKnown RBP12.52□□□□□ -0.41
PTPRF-209ENST00000438120 SMIM11BQ8TCY0 68 aa12.52□□□□□ -0.41
PTPRF-209ENST00000438120 M0R378 163 aa12.51□□□□□ -0.41
PTPRF-209ENST00000438120 C3orf22Q8N5N4 141 aa12.51□□□□□ -0.41
PTPRF-209ENST00000438120 POM121L12Q8N7R1 296 aa12.5□□□□□ -0.41
PTPRF-209ENST00000438120 MRGPRG-AS1Q2M3A8 158 aa12.5□□□□□ -0.41
PTPRF-209ENST00000438120 ODF3L2Q3SX64 289 aa12.49□□□□□ -0.41
PTPRF-209ENST00000438120 UBE2D3P61077 147 aa12.49□□□□□ -0.41
PTPRF-209ENST00000438120 UBE2D2P62837 147 aa12.49□□□□□ -0.41
PTPRF-209ENST00000438120 C2orf91Q6ZV80 131 aa12.49□□□□□ -0.41
PTPRF-209ENST00000438120 HCFC1P51610 2035 aa12.48□□□□□ -0.41
PTPRF-209ENST00000438120 BRI3O95415 125 aa12.48□□□□□ -0.41
PTPRF-209ENST00000438120 CRIP2P52943 208 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-209ENST00000438120 DOPEY1Q5JWR5 2465 aa12.48□□□□□ -0.41
PTPRF-209ENST00000438120 LOC107984640A0A0U1RRK4 108 aa12.48□□□□□ -0.41
PTPRF-209ENST00000438120 CYSRT1A8MQ03 144 aa12.48□□□□□ -0.41
PTPRF-209ENST00000438120 CDC42SE2Q9NRR3 84 aa12.47□□□□□ -0.41
PTPRF-209ENST00000438120 PLAC8L1A1L4L8 177 aa12.46□□□□□ -0.41
PTPRF-209ENST00000438120 C9orf116Q5BN46 136 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-209ENST00000438120 PRR4Q16378 134 aa12.46□□□□□ -0.41
PTPRF-209ENST00000438120 SNURFQ9Y675 71 aa12.46□□□□□ -0.41
PTPRF-209ENST00000438120 MRPS36P82909 103 aaKnown RBP12.46□□□□□ -0.42
PTPRF-209ENST00000438120 TIMM17BO60830 172 aa12.46□□□□□ -0.42
PTPRF-209ENST00000438120 DHRS4-AS1Q9P1J3 65 aa12.45□□□□□ -0.42
PTPRF-209ENST00000438120 FAM236DA0A1B0GTK5 79 aa12.45□□□□□ -0.42
PTPRF-209ENST00000438120 ZNF73O43830 326 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-209ENST00000438120 FAM236CP0DP71 79 aa12.45□□□□□ -0.42
PTPRF-209ENST00000438120 UQCRQO14949 82 aa12.45□□□□□ -0.42
PTPRF-209ENST00000438120 A0A1W2PPR1 153 aa12.44□□□□□ -0.42
PTPRF-209ENST00000438120 UNQ6190/PRO20217Q6UXQ8 127 aa12.44□□□□□ -0.42
PTPRF-209ENST00000438120 MUC22E2RYF6 1773 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-209ENST00000438120 ATP5EP2Q5VTU8 51 aa12.44□□□□□ -0.42
PTPRF-209ENST00000438120 LST1O00453 97 aa12.42□□□□□ -0.42
PTPRF-209ENST00000438120 LINC00242Q5T6M2 205 aa12.41□□□□□ -0.42
PTPRF-209ENST00000438120 Q8IZM0 81 aa12.41□□□□□ -0.42
PTPRF-209ENST00000438120 ZNF706Q9Y5V0 76 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-209ENST00000438120 IGIPA6NJ69 53 aa12.4□□□□□ -0.42
PTPRF-209ENST00000438120 PRR3P79522 188 aaKnown RBP12.4□□□□□ -0.42
PTPRF-209ENST00000438120 COX6A2Q02221 97 aa12.4□□□□□ -0.42
PTPRF-209ENST00000438120 IGLV4-60A0A075B6I1 120 aa12.39□□□□□ -0.43
PTPRF-209ENST00000438120 LINC00694P0DN24 101 aa12.39□□□□□ -0.43
PTPRF-209ENST00000438120 COX17Q14061 63 aa12.38□□□□□ -0.43
PTPRF-209ENST00000438120 PIEZO1Q92508 2521 aa12.38□□□□□ -0.43
PTPRF-209ENST00000438120 Q6ZTC4 211 aa12.38□□□□□ -0.43
PTPRF-209ENST00000438120 FAM30AQ9NZY2 134 aa12.38□□□□□ -0.43
PTPRF-209ENST00000438120 M0QXV9 152 aa12.37□□□□□ -0.43
PTPRF-209ENST00000438120 IGLV1-51P01701 117 aa12.37□□□□□ -0.43
PTPRF-209ENST00000438120 C6orf223Q8N319 242 aa12.37□□□□□ -0.43
PTPRF-209ENST00000438120 CNFNQ9BYD5 112 aa12.37□□□□□ -0.43
PTPRF-209ENST00000438120 URB1-AS1Q96HZ7 61 aa12.35□□□□□ -0.43
PTPRF-209ENST00000438120 CHCHD7Q9BUK0 85 aa12.35□□□□□ -0.43
PTPRF-209ENST00000438120 FAM19A3Q7Z5A8 133 aa12.35□□□□□ -0.43
PTPRF-209ENST00000438120 C10orf142B7Z368 130 aa12.34□□□□□ -0.43
PTPRF-209ENST00000438120 MYO9AB2RTY4 2548 aa12.34□□□□□ -0.43
PTPRF-209ENST00000438120 SMIM1B2RUZ4 78 aa12.34□□□□□ -0.43
PTPRF-209ENST00000438120 A0A0U1RQV1 116 aa12.34□□□□□ -0.43
PTPRF-209ENST00000438120 WDR87Q6ZQQ6 2873 aa12.34□□□□□ -0.43
PTPRF-209ENST00000438120 ZNF580Q9UK33 172 aa12.34□□□□□ -0.43
PTPRF-209ENST00000438120 TRBV10-3A0A0K0K1G6 114 aa12.33□□□□□ -0.43
PTPRF-209ENST00000438120 CELA1Q9UNI1 258 aa12.33□□□□□ -0.44
PTPRF-209ENST00000438120 LINC00310P59036 64 aa12.33□□□□□ -0.44
PTPRF-209ENST00000438120 FHL2Q14192 279 aa12.33□□□□□ -0.44
PTPRF-209ENST00000438120 ATG2AQ2TAZ0 1938 aa12.33□□□□□ -0.44
PTPRF-209ENST00000438120 TSPEAR-AS2P59090 65 aa12.32□□□□□ -0.44
PTPRF-209ENST00000438120 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-209ENST00000438120 LINC00474Q9P2X8 69 aa12.32□□□□□ -0.44
PTPRF-209ENST00000438120 Q6ZSN1 163 aa12.32□□□□□ -0.44
PTPRF-209ENST00000438120 RAI1Q7Z5J4 1906 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-209ENST00000438120 NDUFC2-KCTD14E9PQ53 114 aa12.31□□□□□ -0.44
PTPRF-209ENST00000438120 C10orf25Q5T742 122 aa12.31□□□□□ -0.44
PTPRF-209ENST00000438120 CIRBP-AS1Q8TBR5 109 aa12.3□□□□□ -0.44
PTPRF-209ENST00000438120 SERP2Q8N6R1 65 aa12.3□□□□□ -0.44
PTPRF-209ENST00000438120 LRP4O75096 1905 aa12.3□□□□□ -0.44
PTPRF-209ENST00000438120 XGP55808 180 aa12.29□□□□□ -0.44
PTPRF-209ENST00000438120 NTM-AS1Q6ZSK4 140 aa12.29□□□□□ -0.44
PTPRF-209ENST00000438120 JMJD1CQ15652 2540 aa12.29□□□□□ -0.44
PTPRF-209ENST00000438120 Q8N9L7 120 aa12.28□□□□□ -0.44
PTPRF-209ENST00000438120 PTPRSQ13332 1948 aa12.28□□□□□ -0.44
PTPRF-209ENST00000438120 A0A087WYN8 130 aa12.28□□□□□ -0.44
PTPRF-209ENST00000438120 NUPR2A6NF83 97 aa12.28□□□□□ -0.44
PTPRF-209ENST00000438120 EGFEM1PQ0D2K5 195 aa12.28□□□□□ -0.44
PTPRF-209ENST00000438120 ADAMTSL4-AS1Q5T5F5 129 aa12.27□□□□□ -0.44
PTPRF-209ENST00000438120 EXPH5Q8NEV8 1989 aa12.27□□□□□ -0.44
PTPRF-209ENST00000438120 K7ERS5 55 aa12.27□□□□□ -0.44
PTPRF-209ENST00000438120 CCDC179H3BU77 68 aa12.27□□□□□ -0.45
PTPRF-209ENST00000438120 REG3GQ6UW15 175 aa12.27□□□□□ -0.45
PTPRF-209ENST00000438120 IGLV5-52A0A0A0MRZ9 124 aa12.27□□□□□ -0.45
PTPRF-209ENST00000438120 Q8N814 137 aa12.26□□□□□ -0.45
PTPRF-209ENST00000438120 RETNLBQ9BQ08 111 aa12.26□□□□□ -0.45
PTPRF-209ENST00000438120 FAM240AA0A1B0GVK7 77 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms