RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PRIMA1Q86XR5 153 aa6.28□□□□□ -1.4
USP40-203ENST00000427112 Q8N2B8 174 aa6.28□□□□□ -1.4
USP40-203ENST00000427112 TMEM243Q9BU79 118 aa6.28□□□□□ -1.4
USP40-203ENST00000427112 DEFB130BP0DP73 79 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 DEFB130AP0DP74 79 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 ICOSQ9Y6W8 199 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 V9GYY9 64 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 TRGV2A0A075B6R0 118 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 HAMPP81172 84 aa6.27□□□□□ -1.41
USP40-203ENST00000427112 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.26□□□□□ -1.41
USP40-203ENST00000427112 C20orf197Q8N268 126 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 ATP5G1P05496 136 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 C5orf38Q86SI9 138 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 Q96MF0 132 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 PEMTQ9UBM1 199 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 NOTCH1P46531 2555 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 STHQ8IWL8 128 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 FAM104AQ969W3 186 aa6.26□□□□□ -1.41
USP40-203ENST00000427112 TENM1Q9UKZ4 2725 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 CR1P17927 2039 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 C4orf26Q17RF5 130 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 MAP6D1Q9H9H5 199 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 SPANXA1Q9NS26 97 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 H7C423 109 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 DAD1P61803 113 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 LINC01356Q8N9X3 169 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 CHCHD7Q9BUK0 85 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 ZNF702PQ9H963 129 aa6.25□□□□□ -1.41
USP40-203ENST00000427112 SLPIP03973 132 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 PKD1L1Q8TDX9 2849 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 TRAV23DV6A0A075B6W5 121 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 IGHV1-58A0A0C4DH39 117 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 VSIG2Q96IQ7 327 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 DNAJC30Q96LL9 226 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 UBE2D4Q9Y2X8 147 aa6.24□□□□□ -1.41
USP40-203ENST00000427112 FAM236DA0A1B0GTK5 79 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 FAM236CP0DP71 79 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 C3orf22Q8N5N4 141 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 BBC3Q96PG8 261 aaPredicted RBP6.23□□□□□ -1.41
USP40-203ENST00000427112 RETNQ9HD89 108 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 TENM4Q6N022 2769 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 IGLV10-54A0A075B6I4 117 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 TRAV25A0A0B4J276 109 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 BAALC-AS2P0C853 105 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 LINC00158P58513 81 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 LINC00526Q96FQ7 95 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 UBE2L6O14933 153 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 UQCRQO14949 82 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 SOSTDC1Q6X4U4 206 aa6.23□□□□□ -1.41
USP40-203ENST00000427112 LINC01619G3V211 115 aa6.22□□□□□ -1.41
USP40-203ENST00000427112 K7EMT4 169 aa6.22□□□□□ -1.41
USP40-203ENST00000427112 MED14OSP0DP75 135 aa6.22□□□□□ -1.41
USP40-203ENST00000427112 PRR3P79522 188 aaKnown RBP6.22□□□□□ -1.41
USP40-203ENST00000427112 LITAFQ99732 161 aa6.22□□□□□ -1.41
USP40-203ENST00000427112 TRBV6-5A0A0K0K1A5 114 aa6.22□□□□□ -1.41
USP40-203ENST00000427112 ATP6V0E2Q8NHE4 81 aa6.22□□□□□ -1.41
USP40-203ENST00000427112 BAHCC1Q9P281 2608 aa6.21□□□□□ -1.41
USP40-203ENST00000427112 HTN3P15516 51 aa6.21□□□□□ -1.41
USP40-203ENST00000427112 ODF3L2Q3SX64 289 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 KIR2DL5BQ8NHK3 375 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 ODF3Q96PU9 254 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 TRGV4A0A0C4DH28 118 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 PAX4O43316 350 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 INSP01308 110 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 MIAQ16674 131 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 LINC00242Q5T6M2 205 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 Q8N3U1 123 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 PRORYQ9H606 182 aa6.21□□□□□ -1.42
USP40-203ENST00000427112 MAST4O15021 2626 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 BRI3O95415 125 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 XCL1P47992 114 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 C1orf195Q5TG92 126 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 NTM-AS1Q6ZSK4 140 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 A0A087WVE0 104 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 H3BUA1 57 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 FAM218AQ96MZ4 157 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 SMR3AQ99954 134 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 TRRAPQ9Y4A5 3859 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 TRBV10-2A0A0K0K1G8 114 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 MRPS36P82909 103 aaKnown RBP6.2□□□□□ -1.42
USP40-203ENST00000427112 C1orf158Q8N1D5 194 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 LINC00308Q8TCZ7 52 aa6.2□□□□□ -1.42
USP40-203ENST00000427112 LRCOL1A6NCL2 159 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 IGHV4-31P0DP07 118 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 DEFB114Q30KQ6 69 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 MIR7-3HGQ8N6C7 128 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 ATOX1O00244 68 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 NHLRC4P0CG21 123 aaPredicted RBP6.19□□□□□ -1.42
USP40-203ENST00000427112 SEC61GP60059 68 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 OTOGQ6ZRI0 2925 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 FBN1P35555 2871 aaKnown RBP6.19□□□□□ -1.42
USP40-203ENST00000427112 IGLV4-60A0A075B6I1 120 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 RPL36AP83881 106 aaKnown RBP6.19□□□□□ -1.42
USP40-203ENST00000427112 WFDC9Q8NEX5 89 aa6.19□□□□□ -1.42
USP40-203ENST00000427112 RPL36ALQ969Q0 106 aaKnown RBP6.19□□□□□ -1.42
USP40-203ENST00000427112 A0A0B4J2C4 111 aa6.18□□□□□ -1.42
USP40-203ENST00000427112 J3QLI3 93 aa6.18□□□□□ -1.42
USP40-203ENST00000427112 C9orf129Q5T035 196 aaKnown RBP6.18□□□□□ -1.42
USP40-203ENST00000427112 LAMTOR3Q9UHA4 124 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms