RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CSPG4Q6UVK1 2322 aa3.53□□□□□ -1.85
PCDH9-201ENST00000377861 Q6ZTI0 123 aa3.53□□□□□ -1.85
PCDH9-201ENST00000377861 C6orf223Q8N319 242 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 PTPN13Q12923 2485 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 TRAV23DV6A0A075B6W5 121 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 LINC00269Q8N2A0 174 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 C11orf72Q8NBR9 251 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 PLXNB3Q9ULL4 1909 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 NOTCH4Q99466 2003 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 C22orf34Q6ZV56 151 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.52□□□□□ -1.85
PCDH9-201ENST00000377861 IGHV3-73A0A0B4J1V6 119 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 IGKV2-29A2NJV5 120 aaPredicted RBP3.52□□□□□ -1.85
PCDH9-201ENST00000377861 XAGE1AQ9HD64 81 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 TRAV10A0A0B4J240 114 aa3.52□□□□□ -1.85
PCDH9-201ENST00000377861 DENND4CQ5VZ89 1909 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 K7ERS5 55 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 C20orf197Q8N268 126 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 ZNF292O60281 2723 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 CYSRT1A8MQ03 144 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 FHL2Q14192 279 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 IGLV6-57P01721 117 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 PRYO14603 147 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 WNK1Q9H4A3 2382 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 C11orf45Q8TAV5 145 aa3.51□□□□□ -1.85
PCDH9-201ENST00000377861 LINC01547P58512 204 aaPredicted RBP3.5□□□□□ -1.85
PCDH9-201ENST00000377861 BRK1Q8WUW1 75 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 TMEM254Q8TBM7 123 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 LITAFQ99732 161 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 THADAQ6YHU6 1953 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 CHD9Q3L8U1 2897 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 LINC00167Q96N53 147 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 H0Y9J4 135 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 C14orf132Q9NPU4 83 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 IGKV3OR2-268A0A0C4DH90 116 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 PRR34Q9NV39 138 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 MUC22E2RYF6 1773 aaPredicted RBP3.5□□□□□ -1.85
PCDH9-201ENST00000377861 ENHOQ6UWT2 76 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 LINC00337Q8N6G1 96 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 ABCA2Q9BZC7 2435 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 LINC01556Q5JQF7 62 aa3.5□□□□□ -1.85
PCDH9-201ENST00000377861 ALPK3Q96L96 1907 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 LINC00612Q8N6U2 182 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 RUSC1-AS1Q66K80 236 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 A0A0U1RRA0 63 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 Q8N3U1 123 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 TTTY13Q9BZ97 58 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 FSHBP01225 129 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 LOC100131303A0A0U1RQF7 123 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 SPTBN4Q9H254 2564 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 SETD2Q9BYW2 2564 aaPredicted RBP3.49□□□□□ -1.85
PCDH9-201ENST00000377861 Q6ZS46 218 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 SNRNP200O75643 2136 aaKnown RBP3.49□□□□□ -1.85
PCDH9-201ENST00000377861 DIDO1Q9BTC0 2240 aaKnown RBP3.49□□□□□ -1.85
PCDH9-201ENST00000377861 Q8N9L7 120 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 GRNP28799 593 aaKnown RBP3.49□□□□□ -1.85
PCDH9-201ENST00000377861 FAM19A5Q7Z5A7 132 aaPredicted RBP3.49□□□□□ -1.85
PCDH9-201ENST00000377861 NACAE9PAV3 2078 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 AGRNO00468 2067 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 Q6ZQY7 126 aa3.49□□□□□ -1.85
PCDH9-201ENST00000377861 KIF26AQ9ULI4 1882 aaPredicted RBP3.48□□□□□ -1.85
PCDH9-201ENST00000377861 DOCK7Q96N67 2140 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 TLX1NBP0CAT3 122 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 ESRGQ1W209 222 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 CCDC179H3BU77 68 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 SONP18583 2426 aaKnown RBP3.48□□□□□ -1.85
PCDH9-201ENST00000377861 NDUFS5O43920 106 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 RPL35AP18077 110 aaKnown RBP3.48□□□□□ -1.85
PCDH9-201ENST00000377861 CELA1Q9UNI1 258 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 FER1L5A0AVI2 2057 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 HELZP42694 1942 aaKnown RBP3.48□□□□□ -1.85
PCDH9-201ENST00000377861 LINC00846Q9NV44 126 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 C1orf158Q8N1D5 194 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 C10orf25Q5T742 122 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 KLK12Q9UKR0 248 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 MED13Q9UHV7 2174 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 MYLKQ15746 1914 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 MGAMO43451 1857 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 ODF3L2Q3SX64 289 aa3.48□□□□□ -1.85
PCDH9-201ENST00000377861 MDFIQ99750 246 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 C4orf48Q5BLP8 95 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 KCNQ1DNQ9H478 68 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 CENPEQ02224 2701 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 KPRPQ5T749 579 aaPredicted RBP3.47□□□□□ -1.85
PCDH9-201ENST00000377861 TECTAO75443 2155 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 HIVEP3Q5T1R4 2406 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 IGKV2D-24A0A075B6R9 120 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 SMCPP49901 116 aaPredicted RBP3.47□□□□□ -1.85
PCDH9-201ENST00000377861 ZGRF1Q86YA3 2104 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 DNAJC9-AS1A6NH13 148 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 Q6ZVQ6 151 aa3.47□□□□□ -1.85
PCDH9-201ENST00000377861 SLURP1P55000 103 aa3.46□□□□□ -1.85
PCDH9-201ENST00000377861 POLQO75417 2590 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 ZNF575Q86XF7 245 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 COL4A2P08572 1712 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 TMEM131Q92545 1883 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 IGLV5-48A0A075B6I7 105 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 Q6ZQT0 140 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 ATP11AUNQ6ZP68 121 aa3.46□□□□□ -1.86
PCDH9-201ENST00000377861 ASB16-AS1Q495Z4 193 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms