RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 C1orf134Q5TEV5 83 aa9.63□□□□□ -0.87
LDLR-201ENST00000252444 ATP5EP2Q5VTU8 51 aa9.63□□□□□ -0.87
LDLR-201ENST00000252444 TAX1BP3O14907 124 aa9.63□□□□□ -0.87
LDLR-201ENST00000252444 Q8NAQ8 132 aa9.63□□□□□ -0.87
LDLR-201ENST00000252444 LINC00315P59091 139 aa9.62□□□□□ -0.87
LDLR-201ENST00000252444 HIST1H4AP62805 103 aaKnown RBP9.62□□□□□ -0.87
LDLR-201ENST00000252444 LECT2O14960 151 aa9.62□□□□□ -0.87
LDLR-201ENST00000252444 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.62□□□□□ -0.87
LDLR-201ENST00000252444 NTN5Q8WTR8 489 aaPredicted RBP9.62□□□□□ -0.87
LDLR-201ENST00000252444 URB1-AS1Q96HZ7 61 aa9.61□□□□□ -0.87
LDLR-201ENST00000252444 PPDPFQ9H3Y8 114 aa9.61□□□□□ -0.87
LDLR-201ENST00000252444 CDPF1Q6NVV7 123 aa9.61□□□□□ -0.87
LDLR-201ENST00000252444 ANAPC13Q9BS18 74 aa9.6□□□□□ -0.87
LDLR-201ENST00000252444 WIPF1O43516 503 aa9.6□□□□□ -0.87
LDLR-201ENST00000252444 SS18L2Q9UHA2 77 aa9.6□□□□□ -0.87
LDLR-201ENST00000252444 PRYO14603 147 aa9.59□□□□□ -0.87
LDLR-201ENST00000252444 IGLV5-45A0A087WSX0 123 aa9.59□□□□□ -0.87
LDLR-201ENST00000252444 DAND5Q8N907 189 aa9.59□□□□□ -0.87
LDLR-201ENST00000252444 CYSRT1A8MQ03 144 aa9.59□□□□□ -0.87
LDLR-201ENST00000252444 FAM19A1Q7Z5A9 133 aa9.59□□□□□ -0.87
LDLR-201ENST00000252444 NDUFC2-KCTD14E9PQ53 114 aa9.58□□□□□ -0.88
LDLR-201ENST00000252444 LINC00612Q8N6U2 182 aa9.58□□□□□ -0.88
LDLR-201ENST00000252444 ETDBQ3ZM63 59 aa9.58□□□□□ -0.88
LDLR-201ENST00000252444 RPL28P46779 137 aaKnown RBP9.57□□□□□ -0.88
LDLR-201ENST00000252444 IGKV2-24A0A0C4DH68 120 aa9.57□□□□□ -0.88
LDLR-201ENST00000252444 NREPQ16612 68 aa9.57□□□□□ -0.88
LDLR-201ENST00000252444 IGLV5-39A0A0G2JS06 123 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 LINC00310P59036 64 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 FAM19A3Q7Z5A8 133 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 WWC2-AS2Q96NR7 200 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 USP17L23D6RBM5 183 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 DEFB105AQ8NG35 78 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 PLXNB1O43157 2135 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 Q6ZSN1 163 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 CSNK1G2-AS1Q8NCQ2 148 aa9.56□□□□□ -0.88
LDLR-201ENST00000252444 CSPG4Q6UVK1 2322 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 C3orf84H3BNL1 204 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 MAPKAPK5-AS1Q8N8E1 139 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 TTTY13Q9BZ97 58 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 NOTCH2Q04721 2471 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 IGLV4-60A0A075B6I1 120 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 GAS8-AS1O95177 125 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 HAMPP81172 84 aa9.55□□□□□ -0.88
LDLR-201ENST00000252444 PKD1L2Q7Z442 2459 aa9.54□□□□□ -0.88
LDLR-201ENST00000252444 CELA1Q9UNI1 258 aa9.54□□□□□ -0.88
LDLR-201ENST00000252444 PIEZO2Q9H5I5 2752 aa9.54□□□□□ -0.88
LDLR-201ENST00000252444 IGLV5-52A0A0A0MRZ9 124 aa9.53□□□□□ -0.88
LDLR-201ENST00000252444 FAM19A5Q7Z5A7 132 aaPredicted RBP9.53□□□□□ -0.88
LDLR-201ENST00000252444 ZNF462Q96JM2 2506 aa9.53□□□□□ -0.88
LDLR-201ENST00000252444 ZNF73O43830 326 aaPredicted RBP9.53□□□□□ -0.88
LDLR-201ENST00000252444 A0A096LNJ9 63 aa9.53□□□□□ -0.88
LDLR-201ENST00000252444 PRM2P04554 102 aa9.53□□□□□ -0.88
LDLR-201ENST00000252444 PRB2P02812 416 aaPredicted RBP9.53□□□□□ -0.88
LDLR-201ENST00000252444 SBSPONQ8IVN8 264 aa9.53□□□□□ -0.88
LDLR-201ENST00000252444 PTPN13Q12923 2485 aa9.53□□□□□ -0.88
LDLR-201ENST00000252444 LINC00694P0DN24 101 aa9.52□□□□□ -0.88
LDLR-201ENST00000252444 NACAE9PAV3 2078 aa9.52□□□□□ -0.88
LDLR-201ENST00000252444 CEP295Q9C0D2 2601 aa9.52□□□□□ -0.88
LDLR-201ENST00000252444 C2orf91Q6ZV80 131 aa9.52□□□□□ -0.89
LDLR-201ENST00000252444 C9orf153Q5TBE3 101 aa9.52□□□□□ -0.89
LDLR-201ENST00000252444 LST1O00453 97 aa9.51□□□□□ -0.89
LDLR-201ENST00000252444 TRBV7-6A0A0J9YX20 115 aa9.51□□□□□ -0.89
LDLR-201ENST00000252444 DNAH10OSP0CZ25 163 aa9.51□□□□□ -0.89
LDLR-201ENST00000252444 WFDC10BQ8IUB3 73 aa9.5□□□□□ -0.89
LDLR-201ENST00000252444 TCL1BO95988 128 aa9.5□□□□□ -0.89
LDLR-201ENST00000252444 Q6JHZ5 121 aa9.5□□□□□ -0.89
LDLR-201ENST00000252444 TM2D3Q9BRN9 247 aa9.5□□□□□ -0.89
LDLR-201ENST00000252444 M0QXV9 152 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 PCP4P48539 62 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 CLEC2BQ92478 149 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 FOXI1Q12951 378 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 C6orf223Q8N319 242 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 GVQW2A0A096LPI5 108 aaPredicted RBP9.49□□□□□ -0.89
LDLR-201ENST00000252444 C6orf99Q4VX62 202 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 LINC00643Q86TS7 51 aa9.49□□□□□ -0.89
LDLR-201ENST00000252444 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.48□□□□□ -0.89
LDLR-201ENST00000252444 PLAC8L1A1L4L8 177 aa9.48□□□□□ -0.89
LDLR-201ENST00000252444 TRIAP1O43715 76 aa9.48□□□□□ -0.89
LDLR-201ENST00000252444 REG3GQ6UW15 175 aa9.48□□□□□ -0.89
LDLR-201ENST00000252444 MDFIQ99750 246 aa9.48□□□□□ -0.89
LDLR-201ENST00000252444 B5MCH6 92 aa9.48□□□□□ -0.89
LDLR-201ENST00000252444 HIGD2AQ9BW72 106 aa9.48□□□□□ -0.89
LDLR-201ENST00000252444 IGHV3OR16-9A0A0B4J2B5 98 aa9.47□□□□□ -0.89
LDLR-201ENST00000252444 ESRGQ1W209 222 aa9.47□□□□□ -0.89
LDLR-201ENST00000252444 COX6A2Q02221 97 aa9.47□□□□□ -0.89
LDLR-201ENST00000252444 XAGE1AQ9HD64 81 aa9.47□□□□□ -0.89
LDLR-201ENST00000252444 ATOX1O00244 68 aa9.46□□□□□ -0.89
LDLR-201ENST00000252444 KRTAP10-3P60369 221 aa9.46□□□□□ -0.89
LDLR-201ENST00000252444 UNQ6190/PRO20217Q6UXQ8 127 aa9.46□□□□□ -0.9
LDLR-201ENST00000252444 RPL37AP8A6NKH3 93 aa9.46□□□□□ -0.9
LDLR-201ENST00000252444 NTM-AS1Q6ZSK4 140 aa9.45□□□□□ -0.9
LDLR-201ENST00000252444 NBDYA0A0U1RRE5 68 aa9.45□□□□□ -0.9
LDLR-201ENST00000252444 SMIM11BQ8TCY0 68 aa9.44□□□□□ -0.9
LDLR-201ENST00000252444 UPK3BQ9BT76 320 aa9.44□□□□□ -0.9
LDLR-201ENST00000252444 M0R2N4 97 aa9.44□□□□□ -0.9
LDLR-201ENST00000252444 K7EIL1 84 aa9.44□□□□□ -0.9
LDLR-201ENST00000252444 MP68P56378 58 aa9.43□□□□□ -0.9
LDLR-201ENST00000252444 A0A1B0GW54 56 aa9.43□□□□□ -0.9
LDLR-201ENST00000252444 MRPL55Q7Z7F7 128 aaKnown RBP9.43□□□□□ -0.9
LDLR-201ENST00000252444 SPTBN4Q9H254 2564 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms