RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 SERF2P84101 59 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 SPAG11BQ08648 103 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 GAGE2EQ4V326 116 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 TPPP3Q9BW30 176 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 GAGE2DQ9UEU5 116 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 TNFSF18Q9UNG2 199 aa9.43□□□□□ -0.9
CLK3-217ENST00000566126 C10orf25Q5T742 122 aa9.42□□□□□ -0.9
CLK3-217ENST00000566126 GATD1Q8NB37 220 aa9.42□□□□□ -0.9
CLK3-217ENST00000566126 LINC00242Q5T6M2 205 aa9.41□□□□□ -0.9
CLK3-217ENST00000566126 OR2D3Q8NGH3 330 aa9.41□□□□□ -0.9
CLK3-217ENST00000566126 CTDSP1Q9GZU7 261 aa9.41□□□□□ -0.9
CLK3-217ENST00000566126 NUPR1O60356 82 aa9.4□□□□□ -0.9
CLK3-217ENST00000566126 PET100P0DJ07 73 aa9.4□□□□□ -0.9
CLK3-217ENST00000566126 CTAG1AP78358 180 aa9.4□□□□□ -0.9
CLK3-217ENST00000566126 C5orf38Q86SI9 138 aa9.4□□□□□ -0.9
CLK3-217ENST00000566126 RPL39LQ96EH5 51 aaKnown RBP9.4□□□□□ -0.9
CLK3-217ENST00000566126 SMDT1Q9H4I9 107 aa9.4□□□□□ -0.9
CLK3-217ENST00000566126 FCGBPQ9Y6R7 5405 aaPredicted RBP9.39□□□□□ -0.91
CLK3-217ENST00000566126 CTXND1A0A1B0GTU2 59 aa9.39□□□□□ -0.91
CLK3-217ENST00000566126 C1orf196B1AJZ1 125 aa9.39□□□□□ -0.91
CLK3-217ENST00000566126 INMT-MINDY4F8WBC2 141 aa9.39□□□□□ -0.91
CLK3-217ENST00000566126 TCEAL7Q9BRU2 100 aa9.39□□□□□ -0.91
CLK3-217ENST00000566126 TRGC1P0CF51 173 aa9.38□□□□□ -0.91
CLK3-217ENST00000566126 MZT2BQ6NZ67 158 aa9.38□□□□□ -0.91
CLK3-217ENST00000566126 C6orf48Q9UBA6 75 aa9.38□□□□□ -0.91
CLK3-217ENST00000566126 FHITP49789 147 aa9.37□□□□□ -0.91
CLK3-217ENST00000566126 DEFA1P59665 94 aa9.37□□□□□ -0.91
CLK3-217ENST00000566126 C9orf129Q5T035 196 aaKnown RBP9.37□□□□□ -0.91
CLK3-217ENST00000566126 FP248Q71RG6 208 aaPredicted RBP9.37□□□□□ -0.91
CLK3-217ENST00000566126 MRPL52Q86TS9 123 aaKnown RBP9.37□□□□□ -0.91
CLK3-217ENST00000566126 BAGE2Q86Y30 109 aa9.37□□□□□ -0.91
CLK3-217ENST00000566126 STOML3Q8TAV4 291 aa9.37□□□□□ -0.91
CLK3-217ENST00000566126 RPL28P46779 137 aaKnown RBP9.36□□□□□ -0.91
CLK3-217ENST00000566126 UNQ6190/PRO20217Q6UXQ8 127 aa9.36□□□□□ -0.91
CLK3-217ENST00000566126 OR10D4PQ8NGN7 298 aa9.36□□□□□ -0.91
CLK3-217ENST00000566126 FAM240BA0A1B0GVZ2 78 aa9.35□□□□□ -0.91
CLK3-217ENST00000566126 SDHAF1A6NFY7 115 aa9.35□□□□□ -0.91
CLK3-217ENST00000566126 NDUFA1O15239 70 aa9.35□□□□□ -0.91
CLK3-217ENST00000566126 CST9LP1Q5W188 147 aa9.35□□□□□ -0.91
CLK3-217ENST00000566126 ALG5Q9Y673 324 aa9.35□□□□□ -0.91
CLK3-217ENST00000566126 SYNE2Q8WXH0 6885 aaKnown RBP9.35□□□□□ -0.91
CLK3-217ENST00000566126 F8WDY8 70 aa9.34□□□□□ -0.91
CLK3-217ENST00000566126 TMEM241Q24JQ0 296 aa9.34□□□□□ -0.91
CLK3-217ENST00000566126 FAM229BQ4G0N7 80 aa9.34□□□□□ -0.91
CLK3-217ENST00000566126 S100A9P06702 114 aaKnown RBP9.33□□□□□ -0.92
CLK3-217ENST00000566126 CTRLP40313 264 aa9.33□□□□□ -0.92
CLK3-217ENST00000566126 ORAOV1Q8WV07 137 aa9.33□□□□□ -0.92
CLK3-217ENST00000566126 MRAP2Q96G30 205 aa9.33□□□□□ -0.92
CLK3-217ENST00000566126 I3L3M4 83 aa9.32□□□□□ -0.92
CLK3-217ENST00000566126 LYZL1Q6UWQ5 148 aa9.32□□□□□ -0.92
CLK3-217ENST00000566126 CCDC32Q9BV29 185 aa9.32□□□□□ -0.92
CLK3-217ENST00000566126 TRAV13-1A0A0B4J241 112 aa9.31□□□□□ -0.92
CLK3-217ENST00000566126 SCO2A0A1W2PP80 73 aa9.31□□□□□ -0.92
CLK3-217ENST00000566126 F2Z2F3 143 aa9.31□□□□□ -0.92
CLK3-217ENST00000566126 BCE1O60756 84 aa9.31□□□□□ -0.92
CLK3-217ENST00000566126 PMCHP20382 165 aa9.31□□□□□ -0.92
CLK3-217ENST00000566126 RNASE13Q5GAN3 156 aaKnown RBP9.31□□□□□ -0.92
CLK3-217ENST00000566126 FLGP20930 4061 aaPredicted RBP9.3□□□□□ -0.92
CLK3-217ENST00000566126 TMEM242Q9NWH2 141 aa9.3□□□□□ -0.92
CLK3-217ENST00000566126 C22orf24Q9Y442 160 aa9.3□□□□□ -0.92
CLK3-217ENST00000566126 IGKV2D-26A0A0A0MRZ7 120 aa9.29□□□□□ -0.92
CLK3-217ENST00000566126 MAP1LC3B2A6NCE7 125 aa9.29□□□□□ -0.92
CLK3-217ENST00000566126 RPS20P60866 119 aaKnown RBP9.29□□□□□ -0.92
CLK3-217ENST00000566126 MAP1LC3BQ9GZQ8 125 aa9.29□□□□□ -0.92
CLK3-217ENST00000566126 PAGE4O60829 102 aa9.28□□□□□ -0.92
CLK3-217ENST00000566126 RNASE7Q9H1E1 156 aaKnown RBP9.28□□□□□ -0.92
CLK3-217ENST00000566126 NDUFC2-KCTD14E9PQ53 114 aa9.26□□□□□ -0.93
CLK3-217ENST00000566126 TRBV6-5A0A0K0K1A5 114 aa9.25□□□□□ -0.93
CLK3-217ENST00000566126 C7orf77A4D0Y5 90 aa9.25□□□□□ -0.93
CLK3-217ENST00000566126 M0R2T5 61 aa9.25□□□□□ -0.93
CLK3-217ENST00000566126 FOXA3P55318 350 aaPredicted RBP9.25□□□□□ -0.93
CLK3-217ENST00000566126 TWIST1Q15672 202 aa9.25□□□□□ -0.93
CLK3-217ENST00000566126 KRTAP13-1Q8IUC0 172 aa9.25□□□□□ -0.93
CLK3-217ENST00000566126 CYTL1Q9NRR1 136 aa9.25□□□□□ -0.93
CLK3-217ENST00000566126 MACF1Q9UPN3 7388 aaKnown RBP9.24□□□□□ -0.93
CLK3-217ENST00000566126 LBHQ53QV2 105 aaPredicted RBP9.24□□□□□ -0.93
CLK3-217ENST00000566126 XP32Q5T750 250 aa9.24□□□□□ -0.93
CLK3-217ENST00000566126 RPL7L1Q6DKI1 246 aaKnown RBP9.24□□□□□ -0.93
CLK3-217ENST00000566126 TMUB2Q71RG4 321 aa9.24□□□□□ -0.93
CLK3-217ENST00000566126 C9orf62Q8N4C0 152 aa9.24□□□□□ -0.93
CLK3-217ENST00000566126 CNFNQ9BYD5 112 aa9.24□□□□□ -0.93
CLK3-217ENST00000566126 CSDC2Q9Y534 153 aaKnown RBP9.24□□□□□ -0.93
CLK3-217ENST00000566126 IGHV3OR16-9A0A0B4J2B5 98 aa9.23□□□□□ -0.93
CLK3-217ENST00000566126 IFNA1P01562 189 aa9.23□□□□□ -0.93
CLK3-217ENST00000566126 KIAA0087Q14695 138 aa9.23□□□□□ -0.93
CLK3-217ENST00000566126 C3orf22Q8N5N4 141 aa9.23□□□□□ -0.93
CLK3-217ENST00000566126 UBE2D4Q9Y2X8 147 aa9.23□□□□□ -0.93
CLK3-217ENST00000566126 RPL35P42766 123 aaKnown RBP9.22□□□□□ -0.93
CLK3-217ENST00000566126 AKR1C8PQ5T2L2 129 aa9.22□□□□□ -0.93
CLK3-217ENST00000566126 Q6ZUT4 128 aa9.22□□□□□ -0.93
CLK3-217ENST00000566126 TRBV30A0A0K0K1B3 111 aa9.21□□□□□ -0.94
CLK3-217ENST00000566126 SSNA1O43805 119 aa9.21□□□□□ -0.94
CLK3-217ENST00000566126 SPAG11AQ6PDA7 123 aa9.21□□□□□ -0.94
CLK3-217ENST00000566126 TEX261Q6UWH6 196 aa9.21□□□□□ -0.94
CLK3-217ENST00000566126 XKRY2A2RUG3 117 aa9.2□□□□□ -0.94
CLK3-217ENST00000566126 TNFRSF6BO95407 300 aa9.2□□□□□ -0.94
CLK3-217ENST00000566126 POLR2KP53803 58 aaKnown RBP9.2□□□□□ -0.94
CLK3-217ENST00000566126 C2orf82Q6UX34 121 aa9.2□□□□□ -0.94
CLK3-217ENST00000566126 PACRGQ96M98 296 aaPredicted RBP9.2□□□□□ -0.94
CLK3-217ENST00000566126 FAM210AQ96ND0 272 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms