RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 RETNLBQ9BQ08 111 aa7.6□□□□□ -1.19
VPS29-211ENST00000553128 CARHSP1Q9Y2V2 147 aaKnown RBP7.6□□□□□ -1.19
VPS29-211ENST00000553128 ALG5Q9Y673 324 aa7.6□□□□□ -1.19
VPS29-211ENST00000553128 F2Z2F3 143 aa7.59□□□□□ -1.19
VPS29-211ENST00000553128 COX7A2LO14548 114 aa7.59□□□□□ -1.19
VPS29-211ENST00000553128 ESDP10768 282 aa7.59□□□□□ -1.19
VPS29-211ENST00000553128 RPS20P60866 119 aaKnown RBP7.59□□□□□ -1.19
VPS29-211ENST00000553128 EIF5AL1Q6IS14 154 aaKnown RBP7.59□□□□□ -1.19
VPS29-211ENST00000553128 C2orf48Q96LS8 159 aa7.59□□□□□ -1.19
VPS29-211ENST00000553128 RPP21Q9H633 154 aaKnown RBP7.59□□□□□ -1.19
VPS29-211ENST00000553128 A0A087X002 238 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 PFDN1O60925 122 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 TSHBP01222 138 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 TWIST1Q15672 202 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 CENPWQ5EE01 88 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 C5orf38Q86SI9 138 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 SFT2D1Q8WV19 159 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 CYTL1Q9NRR1 136 aa7.58□□□□□ -1.2
VPS29-211ENST00000553128 FXYD6-FXYD2A0A087WZ82 144 aa7.57□□□□□ -1.2
VPS29-211ENST00000553128 IFNA1P01562 189 aa7.57□□□□□ -1.2
VPS29-211ENST00000553128 CTRLP40313 264 aa7.57□□□□□ -1.2
VPS29-211ENST00000553128 RNASE13Q5GAN3 156 aaKnown RBP7.57□□□□□ -1.2
VPS29-211ENST00000553128 C9orf62Q8N4C0 152 aa7.57□□□□□ -1.2
VPS29-211ENST00000553128 TMEM242Q9NWH2 141 aa7.57□□□□□ -1.2
VPS29-211ENST00000553128 I3L3M4 83 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 PMCHP20382 165 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 SPAG11BQ08648 103 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 RNF151Q2KHN1 245 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 C10orf25Q5T742 122 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 LINC00299Q6ZSB3 139 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 MRPL52Q86TS9 123 aaKnown RBP7.56□□□□□ -1.2
VPS29-211ENST00000553128 TSKUQ8WUA8 353 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 MBD3L1Q8WWY6 194 aa7.56□□□□□ -1.2
VPS29-211ENST00000553128 RNASE7Q9H1E1 156 aaKnown RBP7.56□□□□□ -1.2
VPS29-211ENST00000553128 RAB19A4D1S5 217 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 G3V3Q6 166 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 UBE2BP63146 152 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 KCNRGQ8N5I3 272 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 FAM213BQ8TBF2 198 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 MRAP2Q96G30 205 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 CNFNQ9BYD5 112 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 CDIP1Q9H305 208 aa7.55□□□□□ -1.2
VPS29-211ENST00000553128 C1orf196B1AJZ1 125 aa7.54□□□□□ -1.2
VPS29-211ENST00000553128 M0QXV9 152 aa7.54□□□□□ -1.2
VPS29-211ENST00000553128 GAGE2EQ4V326 116 aa7.54□□□□□ -1.2
VPS29-211ENST00000553128 GAGE2DQ9UEU5 116 aa7.54□□□□□ -1.2
VPS29-211ENST00000553128 TRAV13-1A0A0B4J241 112 aa7.53□□□□□ -1.2
VPS29-211ENST00000553128 XKRY2A2RUG3 117 aa7.53□□□□□ -1.2
VPS29-211ENST00000553128 ZNF861PO60384 105 aa7.53□□□□□ -1.2
VPS29-211ENST00000553128 C11orf52Q96A22 123 aa7.53□□□□□ -1.2
VPS29-211ENST00000553128 MRPL35Q9NZE8 188 aaKnown RBP7.53□□□□□ -1.2
VPS29-211ENST00000553128 TRBV20OR9-2A0A075B6H5 130 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 TRBV6-5A0A0K0K1A5 114 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 CCL20P78556 96 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 TPRXLQ17RH7 258 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 UNQ6190/PRO20217Q6UXQ8 127 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 IMMP2LQ96T52 175 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 C6orf48Q9UBA6 75 aa7.52□□□□□ -1.21
VPS29-211ENST00000553128 GIPP09681 153 aaPredicted RBP7.51□□□□□ -1.21
VPS29-211ENST00000553128 TLX1NBP0CAT3 122 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 NUDT10Q8NFP7 164 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 TYMSOSQ8TAI1 123 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 NUDT11Q96G61 164 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 SMDT1Q9H4I9 107 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 ANAPC11Q9NYG5 84 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 NDUFA13Q9P0J0 144 aa7.51□□□□□ -1.21
VPS29-211ENST00000553128 C7orf77A4D0Y5 90 aa7.5□□□□□ -1.21
VPS29-211ENST00000553128 GNG4P50150 75 aa7.5□□□□□ -1.21
VPS29-211ENST00000553128 OR10D4PQ8NGN7 298 aa7.5□□□□□ -1.21
VPS29-211ENST00000553128 ORAOV1Q8WV07 137 aa7.5□□□□□ -1.21
VPS29-211ENST00000553128 POLR2KP53803 58 aaKnown RBP7.49□□□□□ -1.21
VPS29-211ENST00000553128 C9orf129Q5T035 196 aaKnown RBP7.49□□□□□ -1.21
VPS29-211ENST00000553128 TEX261Q6UWH6 196 aa7.49□□□□□ -1.21
VPS29-211ENST00000553128 Q6ZUT4 128 aa7.49□□□□□ -1.21
VPS29-211ENST00000553128 KRTAP4-1Q9BYQ7 146 aa7.49□□□□□ -1.21
VPS29-211ENST00000553128 ST20Q9HBF5 79 aa7.49□□□□□ -1.21
VPS29-211ENST00000553128 UBE2D4Q9Y2X8 147 aa7.49□□□□□ -1.21
VPS29-211ENST00000553128 IGLV7-46A0A075B6I9 117 aa7.48□□□□□ -1.21
VPS29-211ENST00000553128 NDUFA1O15239 70 aa7.48□□□□□ -1.21
VPS29-211ENST00000553128 ARPC5O15511 151 aa7.48□□□□□ -1.21
VPS29-211ENST00000553128 H2AFB1P0C5Y9 115 aa7.48□□□□□ -1.21
VPS29-211ENST00000553128 LINC01547P58512 204 aaPredicted RBP7.48□□□□□ -1.21
VPS29-211ENST00000553128 SRSF3P84103 164 aaKnown RBP7.48□□□□□ -1.21
VPS29-211ENST00000553128 KRTAP13-2Q52LG2 175 aa7.48□□□□□ -1.21
VPS29-211ENST00000553128 GNG13Q9P2W3 67 aa7.48□□□□□ -1.21
VPS29-211ENST00000553128 TRBV27A0A0K0K1C4 114 aa7.47□□□□□ -1.21
VPS29-211ENST00000553128 CRYGAP11844 174 aa7.47□□□□□ -1.21
VPS29-211ENST00000553128 SMIM12Q96EX1 92 aa7.47□□□□□ -1.21
VPS29-211ENST00000553128 SMIM15Q7Z3B0 74 aa7.46□□□□□ -1.22
VPS29-211ENST00000553128 CTDSP1Q9GZU7 261 aa7.46□□□□□ -1.22
VPS29-211ENST00000553128 CSDC2Q9Y534 153 aaKnown RBP7.46□□□□□ -1.22
VPS29-211ENST00000553128 UMAD1C9J7I0 102 aa7.45□□□□□ -1.22
VPS29-211ENST00000553128 K7EN84 100 aa7.45□□□□□ -1.22
VPS29-211ENST00000553128 TMEM241Q24JQ0 296 aa7.45□□□□□ -1.22
VPS29-211ENST00000553128 LINC00173Q6ZV60 143 aa7.45□□□□□ -1.22
VPS29-211ENST00000553128 FAM104AQ969W3 186 aa7.45□□□□□ -1.22
VPS29-211ENST00000553128 MANBALQ9NQG1 85 aa7.45□□□□□ -1.22
VPS29-211ENST00000553128 IGHV3OR16-9A0A0B4J2B5 98 aa7.44□□□□□ -1.22
VPS29-211ENST00000553128 F8WDY8 70 aa7.44□□□□□ -1.22
VPS29-211ENST00000553128 SMKR1H3BMG3 65 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms