RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 IGHV1-24A0A0C4DH33 117 aa6.3□□□□□ -1.4
TMEM39A-210ENST00000490099 COLCA2A8K830 154 aa6.3□□□□□ -1.4
TMEM39A-210ENST00000490099 RAB5AP20339 215 aa6.3□□□□□ -1.4
TMEM39A-210ENST00000490099 DGAT2L7PQ6IED9 249 aa6.3□□□□□ -1.4
TMEM39A-210ENST00000490099 C20orf203Q8NBC4 194 aa6.3□□□□□ -1.4
TMEM39A-210ENST00000490099 DPH3P1Q9H4G8 78 aa6.3□□□□□ -1.4
TMEM39A-210ENST00000490099 USP17L23D6RBM5 183 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 PLA2G1BP04054 148 aaKnown RBP6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 PRSS1P07477 247 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 RPS10P46783 165 aaKnown RBP6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 GAGE6Q13070 117 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 TMEM136Q6ZRR5 245 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 LINC00269Q8N2A0 174 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 C9orf163Q8N9P6 203 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 CIRBP-AS1Q8TBR5 109 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 TRAPPC1Q9Y5R8 145 aa6.29□□□□□ -1.4
TMEM39A-210ENST00000490099 TRAV8-4A0A0B4J246 113 aa6.28□□□□□ -1.4
TMEM39A-210ENST00000490099 CRPP02741 224 aa6.28□□□□□ -1.4
TMEM39A-210ENST00000490099 APCSP02743 223 aa6.28□□□□□ -1.4
TMEM39A-210ENST00000490099 MGPP08493 103 aa6.28□□□□□ -1.4
TMEM39A-210ENST00000490099 FAM104BQ5XKR9 115 aa6.28□□□□□ -1.4
TMEM39A-210ENST00000490099 TMEM243Q9BU79 118 aa6.28□□□□□ -1.4
TMEM39A-210ENST00000490099 IGLV4-60A0A075B6I1 120 aa6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 KRTAP29-1A8MX34 341 aaPredicted RBP6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 PPP1R17O96001 155 aa6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 PPBPP02775 128 aa6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 REG3AQ06141 175 aa6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 MRAP2Q96G30 205 aa6.27□□□□□ -1.41
TMEM39A-210ENST00000490099 CNBPP62633 177 aaKnown RBP6.26□□□□□ -1.41
TMEM39A-210ENST00000490099 FABP9Q0Z7S8 132 aa6.26□□□□□ -1.41
TMEM39A-210ENST00000490099 AMN1Q8IY45 258 aa6.26□□□□□ -1.41
TMEM39A-210ENST00000490099 DEFB104AQ8WTQ1 72 aa6.26□□□□□ -1.41
TMEM39A-210ENST00000490099 LAMTOR2Q9Y2Q5 125 aa6.26□□□□□ -1.41
TMEM39A-210ENST00000490099 TRBV6-5A0A0K0K1A5 114 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 C1orf196B1AJZ1 125 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 SLPIP03973 132 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 RAB4AP20338 218 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 CKS2P33552 79 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 CIRBPQ14011 172 aaKnown RBP6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 COTL1Q14019 142 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 MRPL51Q4U2R6 128 aaKnown RBP6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 ORMDL3Q8N138 153 aa6.25□□□□□ -1.41
TMEM39A-210ENST00000490099 H7C423 109 aa6.24□□□□□ -1.41
TMEM39A-210ENST00000490099 NCR2O95944 276 aa6.24□□□□□ -1.41
TMEM39A-210ENST00000490099 TRGC2P03986 189 aa6.24□□□□□ -1.41
TMEM39A-210ENST00000490099 CLPSL2Q6UWE3 100 aa6.24□□□□□ -1.41
TMEM39A-210ENST00000490099 RNF185Q96GF1 192 aa6.24□□□□□ -1.41
TMEM39A-210ENST00000490099 TRAV26-2A0A0B4J265 109 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 D6R8Y8 96 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 PANO1I0J062 215 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 PHOX2AO14813 284 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 AMTP48728 403 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 RAB5BP61020 215 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 RPL39LQ96EH5 51 aaKnown RBP6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 PRELID3AQ96N28 172 aa6.23□□□□□ -1.41
TMEM39A-210ENST00000490099 IGLV10-54A0A075B6I4 117 aa6.22□□□□□ -1.41
TMEM39A-210ENST00000490099 ESDP10768 282 aa6.22□□□□□ -1.41
TMEM39A-210ENST00000490099 ALKBH7Q9BT30 221 aaPredicted RBP6.22□□□□□ -1.41
TMEM39A-210ENST00000490099 KRTAP4-8Q9BYQ9 185 aa6.22□□□□□ -1.41
TMEM39A-210ENST00000490099 SDHAF1A6NFY7 115 aa6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 GAS8-AS1O95177 125 aa6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 POLR2KP53803 58 aaKnown RBP6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 KIAA1644Q3SXP7 199 aa6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 C15orf56Q8N910 161 aa6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 C20orf78Q9BR46 151 aa6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 MAP1LC3AQ9H492 121 aa6.21□□□□□ -1.42
TMEM39A-210ENST00000490099 SMKR1H3BMG3 65 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 I3L3M4 83 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 UBE2L6O14933 153 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 TCAPO15273 167 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 TNFRSF6BO95407 300 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 OXTP01178 125 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 FGF6P10767 208 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 PMCHP20382 165 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 ST20Q9HBF5 79 aa6.2□□□□□ -1.42
TMEM39A-210ENST00000490099 LRP1Q07954 4544 aaKnown RBP6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 TRBV27A0A0K0K1C4 114 aa6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 hDV102S1A0JD36 115 aa6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 TSHBP01222 138 aa6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 NPYP01303 97 aa6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 ZNF25P17030 456 aaPredicted RBP6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 SUMO2P61956 95 aaKnown RBP6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 RPL32P62910 135 aaKnown RBP6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 NRACQ8N912 160 aa6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 NXT2Q9NPJ8 142 aaKnown RBP6.19□□□□□ -1.42
TMEM39A-210ENST00000490099 IGHV3-64A0A075B6Q5 118 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 GVQW2A0A096LPI5 108 aaPredicted RBP6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 GAGE12HA6NDE8 117 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 PRSS47A8MTI9 375 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 K7EMI3 77 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST1H2BKO60814 126 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST1H2BJP06899 126 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST1H2BOP23527 126 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST1H2BBP33778 126 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HNRNPA3P51991 378 aaKnown RBP6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST1H2BDP58876 126 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST1H2BCP62807 126 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 FOXI1Q12951 378 aa6.18□□□□□ -1.42
TMEM39A-210ENST00000490099 HIST2H2BEQ16778 126 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms