RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 CHAC1Q9BUX1 264 aa12.43□□□□□ -0.42
COL7A1-207ENST00000467985 D6R8Y8 96 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 PPBPP02775 128 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 DGAT2L7PQ6IED9 249 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 KRTAP26-1Q6PEX3 210 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 SCXQ7RTU7 201 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 ORMDL3Q8N138 153 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 LINC00528Q8N1L1 170 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 C20orf203Q8NBC4 194 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 RPL39LQ96EH5 51 aaKnown RBP12.42□□□□□ -0.42
COL7A1-207ENST00000467985 TRAPPC1Q9Y5R8 145 aa12.42□□□□□ -0.42
COL7A1-207ENST00000467985 FABP9Q0Z7S8 132 aa12.41□□□□□ -0.42
COL7A1-207ENST00000467985 YPEL4Q96NS1 127 aa12.41□□□□□ -0.42
COL7A1-207ENST00000467985 MRPL18Q9H0U6 180 aaKnown RBP12.41□□□□□ -0.42
COL7A1-207ENST00000467985 PRSS1P07477 247 aa12.4□□□□□ -0.42
COL7A1-207ENST00000467985 ST20Q9HBF5 79 aa12.4□□□□□ -0.42
COL7A1-207ENST00000467985 IGLV4-60A0A075B6I1 120 aa12.39□□□□□ -0.43
COL7A1-207ENST00000467985 PRELID3AQ96N28 172 aa12.39□□□□□ -0.43
COL7A1-207ENST00000467985 IGLV10-54A0A075B6I4 117 aa12.38□□□□□ -0.43
COL7A1-207ENST00000467985 RPS10P46783 165 aaKnown RBP12.38□□□□□ -0.43
COL7A1-207ENST00000467985 KIAA1644Q3SXP7 199 aa12.38□□□□□ -0.43
COL7A1-207ENST00000467985 GAS8-AS1O95177 125 aa12.37□□□□□ -0.43
COL7A1-207ENST00000467985 CIRBP-AS1Q8TBR5 109 aa12.37□□□□□ -0.43
COL7A1-207ENST00000467985 DEFB104AQ8WTQ1 72 aa12.37□□□□□ -0.43
COL7A1-207ENST00000467985 SDHAF1A6NFY7 115 aa12.36□□□□□ -0.43
COL7A1-207ENST00000467985 H7C423 109 aa12.36□□□□□ -0.43
COL7A1-207ENST00000467985 TNFRSF6BO95407 300 aa12.36□□□□□ -0.43
COL7A1-207ENST00000467985 C9orf163Q8N9P6 203 aa12.36□□□□□ -0.43
COL7A1-207ENST00000467985 LAMTOR2Q9Y2Q5 125 aa12.36□□□□□ -0.43
COL7A1-207ENST00000467985 TRBV6-5A0A0K0K1A5 114 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 COLCA2A8K830 154 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 NPYP01303 97 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 RAB5AP20339 215 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 PMCHP20382 165 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 SUMO2P61956 95 aaKnown RBP12.35□□□□□ -0.43
COL7A1-207ENST00000467985 AMMECR1LQ6DCA0 310 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 NRACQ8N912 160 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 MAP1LC3AQ9H492 121 aa12.35□□□□□ -0.43
COL7A1-207ENST00000467985 PHOX2AO14813 284 aa12.34□□□□□ -0.43
COL7A1-207ENST00000467985 C20orf78Q9BR46 151 aa12.34□□□□□ -0.43
COL7A1-207ENST00000467985 hDV102S1A0JD36 115 aa12.33□□□□□ -0.44
COL7A1-207ENST00000467985 I3L3M4 83 aa12.33□□□□□ -0.44
COL7A1-207ENST00000467985 CNBPP62633 177 aaKnown RBP12.33□□□□□ -0.44
COL7A1-207ENST00000467985 AP5S1Q9NUS5 200 aa12.33□□□□□ -0.44
COL7A1-207ENST00000467985 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.31□□□□□ -0.44
COL7A1-207ENST00000467985 LOC389332A0A1B0GUA5 103 aa12.31□□□□□ -0.44
COL7A1-207ENST00000467985 VCYO14598 125 aa12.31□□□□□ -0.44
COL7A1-207ENST00000467985 ZNF25P17030 456 aaPredicted RBP12.31□□□□□ -0.44
COL7A1-207ENST00000467985 FCER1GP30273 86 aa12.31□□□□□ -0.44
COL7A1-207ENST00000467985 RNASEKQ6P5S7 137 aaKnown RBP12.31□□□□□ -0.44
COL7A1-207ENST00000467985 CFAP161Q6P656 301 aa12.31□□□□□ -0.44
COL7A1-207ENST00000467985 KIR2DL4Q99706 377 aa12.31□□□□□ -0.44
COL7A1-207ENST00000467985 SMIM2Q9BVW6 85 aa12.31□□□□□ -0.44
COL7A1-207ENST00000467985 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.3□□□□□ -0.44
COL7A1-207ENST00000467985 IGKV2-29A2NJV5 120 aaPredicted RBP12.3□□□□□ -0.44
COL7A1-207ENST00000467985 TRGC2P03986 189 aa12.3□□□□□ -0.44
COL7A1-207ENST00000467985 FGF6P10767 208 aa12.3□□□□□ -0.44
COL7A1-207ENST00000467985 ALKBH7Q9BT30 221 aaPredicted RBP12.3□□□□□ -0.44
COL7A1-207ENST00000467985 SDIM1Q6ZPB5 146 aa12.29□□□□□ -0.44
COL7A1-207ENST00000467985 TMEM101Q96IK0 257 aa12.29□□□□□ -0.44
COL7A1-207ENST00000467985 TRBV27A0A0K0K1C4 114 aa12.28□□□□□ -0.44
COL7A1-207ENST00000467985 GAGE12HA6NDE8 117 aa12.28□□□□□ -0.44
COL7A1-207ENST00000467985 POLR2KP53803 58 aaKnown RBP12.28□□□□□ -0.44
COL7A1-207ENST00000467985 RPL32P62910 135 aaKnown RBP12.28□□□□□ -0.44
COL7A1-207ENST00000467985 IGHV3-64A0A075B6Q5 118 aa12.27□□□□□ -0.45
COL7A1-207ENST00000467985 IGKV3OR2-268A0A0C4DH90 116 aa12.27□□□□□ -0.45
COL7A1-207ENST00000467985 J3QL48 77 aa12.27□□□□□ -0.45
COL7A1-207ENST00000467985 TCAPO15273 167 aa12.27□□□□□ -0.45
COL7A1-207ENST00000467985 PRSS3P2Q8NHM4 247 aa12.27□□□□□ -0.45
COL7A1-207ENST00000467985 NXT2Q9NPJ8 142 aaKnown RBP12.27□□□□□ -0.45
COL7A1-207ENST00000467985 TSHBP01222 138 aa12.26□□□□□ -0.45
COL7A1-207ENST00000467985 CHCHD10Q8WYQ3 142 aaPredicted RBP12.26□□□□□ -0.45
COL7A1-207ENST00000467985 ESDP10768 282 aa12.25□□□□□ -0.45
COL7A1-207ENST00000467985 KRTAP10-4P60372 401 aaPredicted RBP12.25□□□□□ -0.45
COL7A1-207ENST00000467985 Q8N8P6 123 aa12.25□□□□□ -0.45
COL7A1-207ENST00000467985 OR5A1Q8NGJ0 315 aa12.25□□□□□ -0.45
COL7A1-207ENST00000467985 KRTAP29-1A8MX34 341 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-207ENST00000467985 IFI27P40305 119 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-207ENST00000467985 FA2HQ7L5A8 372 aa12.24□□□□□ -0.45
COL7A1-207ENST00000467985 C15orf56Q8N910 161 aa12.24□□□□□ -0.45
COL7A1-207ENST00000467985 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-207ENST00000467985 PRSS47A8MTI9 375 aa12.23□□□□□ -0.45
COL7A1-207ENST00000467985 CIRBPQ14011 172 aaKnown RBP12.23□□□□□ -0.45
COL7A1-207ENST00000467985 MRPL52Q86TS9 123 aaKnown RBP12.23□□□□□ -0.45
COL7A1-207ENST00000467985 C18orf32Q8TCD1 76 aa12.23□□□□□ -0.45
COL7A1-207ENST00000467985 SLPIP03973 132 aa12.22□□□□□ -0.45
COL7A1-207ENST00000467985 RPL37AP61513 92 aaKnown RBP12.22□□□□□ -0.45
COL7A1-207ENST00000467985 RAB5BP61020 215 aa12.21□□□□□ -0.45
COL7A1-207ENST00000467985 SMAGPQ0VAQ4 97 aa12.21□□□□□ -0.45
COL7A1-207ENST00000467985 ORMDL2Q53FV1 153 aa12.21□□□□□ -0.45
COL7A1-207ENST00000467985 TMEM18Q96B42 140 aa12.21□□□□□ -0.45
COL7A1-207ENST00000467985 C1orf196B1AJZ1 125 aa12.2□□□□□ -0.46
COL7A1-207ENST00000467985 PANO1I0J062 215 aa12.2□□□□□ -0.46
COL7A1-207ENST00000467985 FOXI1Q12951 378 aa12.2□□□□□ -0.46
COL7A1-207ENST00000467985 BAGE3Q86Y29 109 aa12.2□□□□□ -0.46
COL7A1-207ENST00000467985 DPH3Q96FX2 82 aa12.2□□□□□ -0.46
COL7A1-207ENST00000467985 GVQW2A0A096LPI5 108 aaPredicted RBP12.19□□□□□ -0.46
COL7A1-207ENST00000467985 LINC00959A0A1B0GUT2 108 aa12.19□□□□□ -0.46
COL7A1-207ENST00000467985 K7EMI3 77 aa12.19□□□□□ -0.46
COL7A1-207ENST00000467985 XCL1P47992 114 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms