RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 TNFRSF6BO95407 300 aa10.45□□□□□ -0.74
CUX2-202ENST00000397643 C20orf78Q9BR46 151 aa10.45□□□□□ -0.74
CUX2-202ENST00000397643 LAMTOR2Q9Y2Q5 125 aa10.45□□□□□ -0.74
CUX2-202ENST00000397643 SDHAF1A6NFY7 115 aa10.44□□□□□ -0.74
CUX2-202ENST00000397643 RPL37AP61513 92 aaKnown RBP10.44□□□□□ -0.74
CUX2-202ENST00000397643 SUMO2P61956 95 aaKnown RBP10.44□□□□□ -0.74
CUX2-202ENST00000397643 KIAA1644Q3SXP7 199 aa10.44□□□□□ -0.74
CUX2-202ENST00000397643 TMEM97Q5BJF2 176 aa10.44□□□□□ -0.74
CUX2-202ENST00000397643 IGKV2D-24A0A075B6R9 120 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 VCYO14598 125 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 NPYP01303 97 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 RAB5AP20339 215 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 PMCHP20382 165 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 NIT1Q86X76 327 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 RMI2Q96E14 147 aa10.43□□□□□ -0.74
CUX2-202ENST00000397643 I3L3M4 83 aa10.42□□□□□ -0.74
CUX2-202ENST00000397643 POLR2KP53803 58 aaKnown RBP10.42□□□□□ -0.74
CUX2-202ENST00000397643 COTL1Q14019 142 aa10.42□□□□□ -0.74
CUX2-202ENST00000397643 MAP1LC3AQ9H492 121 aa10.42□□□□□ -0.74
CUX2-202ENST00000397643 RPL32P62910 135 aaKnown RBP10.41□□□□□ -0.74
CUX2-202ENST00000397643 KLK12Q9UKR0 248 aa10.41□□□□□ -0.74
CUX2-202ENST00000397643 TRBV6-8A0A0A6YYG3 113 aa10.4□□□□□ -0.74
CUX2-202ENST00000397643 TRBV27A0A0K0K1C4 114 aa10.4□□□□□ -0.74
CUX2-202ENST00000397643 ALKBH7Q9BT30 221 aaPredicted RBP10.4□□□□□ -0.74
CUX2-202ENST00000397643 IGHV1-24A0A0C4DH33 117 aa10.39□□□□□ -0.75
CUX2-202ENST00000397643 PRSS47A8MTI9 375 aa10.39□□□□□ -0.75
CUX2-202ENST00000397643 TCAPO15273 167 aa10.39□□□□□ -0.75
CUX2-202ENST00000397643 UBE2WQ96B02 151 aa10.39□□□□□ -0.75
CUX2-202ENST00000397643 KIR2DL4Q99706 377 aa10.39□□□□□ -0.75
CUX2-202ENST00000397643 SMIM2Q9BVW6 85 aa10.39□□□□□ -0.75
CUX2-202ENST00000397643 TRBV25-1A0A075B6N4 114 aa10.38□□□□□ -0.75
CUX2-202ENST00000397643 LOC389332A0A1B0GUA5 103 aa10.38□□□□□ -0.75
CUX2-202ENST00000397643 TRGC2P03986 189 aa10.38□□□□□ -0.75
CUX2-202ENST00000397643 FCER1GP30273 86 aa10.38□□□□□ -0.75
CUX2-202ENST00000397643 AMTP48728 403 aa10.37□□□□□ -0.75
CUX2-202ENST00000397643 IQCJQ1A5X6 159 aa10.37□□□□□ -0.75
CUX2-202ENST00000397643 NTM-AS1Q6ZSK4 140 aa10.37□□□□□ -0.75
CUX2-202ENST00000397643 TSHBP01222 138 aa10.36□□□□□ -0.75
CUX2-202ENST00000397643 Q8N8P6 123 aa10.36□□□□□ -0.75
CUX2-202ENST00000397643 CHCHD5Q9BSY4 110 aa10.36□□□□□ -0.75
CUX2-202ENST00000397643 TMEM243Q9BU79 118 aa10.36□□□□□ -0.75
CUX2-202ENST00000397643 CHCHD7Q9BUK0 85 aa10.36□□□□□ -0.75
CUX2-202ENST00000397643 NXT2Q9NPJ8 142 aaKnown RBP10.36□□□□□ -0.75
CUX2-202ENST00000397643 PANO1I0J062 215 aa10.35□□□□□ -0.75
CUX2-202ENST00000397643 PKIAP61925 76 aa10.35□□□□□ -0.75
CUX2-202ENST00000397643 C14orf177Q52M58 125 aa10.35□□□□□ -0.75
CUX2-202ENST00000397643 PRSS3P2Q8NHM4 247 aa10.35□□□□□ -0.75
CUX2-202ENST00000397643 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.35□□□□□ -0.75
CUX2-202ENST00000397643 TMEM262E9PQX1 116 aa10.34□□□□□ -0.75
CUX2-202ENST00000397643 UBE2L6O14933 153 aa10.34□□□□□ -0.75
CUX2-202ENST00000397643 A0A087WX48 190 aa10.33□□□□□ -0.76
CUX2-202ENST00000397643 K7EMI3 77 aa10.33□□□□□ -0.76
CUX2-202ENST00000397643 IFI27P40305 119 aaPredicted RBP10.33□□□□□ -0.76
CUX2-202ENST00000397643 ENHOQ6UWT2 76 aa10.33□□□□□ -0.76
CUX2-202ENST00000397643 ESDP10768 282 aa10.32□□□□□ -0.76
CUX2-202ENST00000397643 Q0VG73 95 aa10.32□□□□□ -0.76
CUX2-202ENST00000397643 Q6ZRU5 148 aa10.32□□□□□ -0.76
CUX2-202ENST00000397643 FA2HQ7L5A8 372 aa10.32□□□□□ -0.76
CUX2-202ENST00000397643 C18orf32Q8TCD1 76 aa10.32□□□□□ -0.76
CUX2-202ENST00000397643 C1orf43Q9BWL3 253 aa10.32□□□□□ -0.76
CUX2-202ENST00000397643 USP17L23D6RBM5 183 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 H7C423 109 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 PRSS1P07477 247 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 RAB5BP61020 215 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 GAGE6Q13070 117 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 ORMDL2Q53FV1 153 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 C9orf163Q8N9P6 203 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 TMEM18Q96B42 140 aa10.31□□□□□ -0.76
CUX2-202ENST00000397643 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.3□□□□□ -0.76
CUX2-202ENST00000397643 IGKV2-29A2NJV5 120 aaPredicted RBP10.3□□□□□ -0.76
CUX2-202ENST00000397643 SMAGPQ0VAQ4 97 aa10.3□□□□□ -0.76
CUX2-202ENST00000397643 G0S2P27469 103 aa10.29□□□□□ -0.76
CUX2-202ENST00000397643 AMMECR1LQ6DCA0 310 aa10.29□□□□□ -0.76
CUX2-202ENST00000397643 BAGE3Q86Y29 109 aa10.29□□□□□ -0.76
CUX2-202ENST00000397643 LINC01546A6NGU7 62 aa10.28□□□□□ -0.76
CUX2-202ENST00000397643 LINC00614P0C842 121 aa10.28□□□□□ -0.76
CUX2-202ENST00000397643 MPV17L2Q567V2 206 aa10.28□□□□□ -0.76
CUX2-202ENST00000397643 DGAT2L7PQ6IED9 249 aa10.28□□□□□ -0.76
CUX2-202ENST00000397643 SDIM1Q6ZPB5 146 aa10.28□□□□□ -0.76
CUX2-202ENST00000397643 C20orf203Q8NBC4 194 aa10.28□□□□□ -0.76
CUX2-202ENST00000397643 C1orf196B1AJZ1 125 aa10.27□□□□□ -0.77
CUX2-202ENST00000397643 FGF6P10767 208 aa10.27□□□□□ -0.77
CUX2-202ENST00000397643 RBX1P62877 108 aa10.27□□□□□ -0.77
CUX2-202ENST00000397643 CIRBPQ14011 172 aaKnown RBP10.27□□□□□ -0.77
CUX2-202ENST00000397643 RNASEKQ6P5S7 137 aaKnown RBP10.27□□□□□ -0.77
CUX2-202ENST00000397643 KRTAP26-1Q6PEX3 210 aa10.27□□□□□ -0.77
CUX2-202ENST00000397643 TMEM101Q96IK0 257 aa10.27□□□□□ -0.77
CUX2-202ENST00000397643 AP5S1Q9NUS5 200 aa10.27□□□□□ -0.77
CUX2-202ENST00000397643 A0A1B0GUV1 79 aa10.26□□□□□ -0.77
CUX2-202ENST00000397643 CRPP02741 224 aa10.26□□□□□ -0.77
CUX2-202ENST00000397643 ZNF25P17030 456 aaPredicted RBP10.26□□□□□ -0.77
CUX2-202ENST00000397643 MRPL52Q86TS9 123 aaKnown RBP10.25□□□□□ -0.77
CUX2-202ENST00000397643 OR5A1Q8NGJ0 315 aa10.25□□□□□ -0.77
CUX2-202ENST00000397643 CHCHD1Q96BP2 118 aaKnown RBP10.25□□□□□ -0.77
CUX2-202ENST00000397643 CYSLTR1Q9Y271 337 aa10.25□□□□□ -0.77
CUX2-202ENST00000397643 LINC01549A6NIU2 74 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BKO60814 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 ANGP03950 147 aaKnown RBP10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BJP06899 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BOP23527 126 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms