RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MRPL52Q86TS9 123 aaKnown RBP8.36□□□□□ -1.07
VPS4A-201ENST00000254950 GTSF1LQ9H1H1 148 aa8.36□□□□□ -1.07
VPS4A-201ENST00000254950 C11orf86A6NJI1 115 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 MAST4O15021 2626 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 TSHBP01222 138 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 KRTAP10-3P60369 221 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 RNF183Q96D59 192 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 URB1-AS1Q96HZ7 61 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 UBR5O95071 2799 aaPredicted RBP8.35□□□□□ -1.07
VPS4A-201ENST00000254950 UTP20O75691 2785 aaKnown RBP8.35□□□□□ -1.07
VPS4A-201ENST00000254950 PCP2Q8IVA1 136 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 C11orf72Q8NBR9 251 aa8.35□□□□□ -1.07
VPS4A-201ENST00000254950 PSCAO43653 123 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 C5orf38Q86SI9 138 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 RMI2Q96E14 147 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 TRBV6-8A0A0A6YYG3 113 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 KIF25-AS1Q9Y6Z4 181 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 J3QR89 54 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 OVOL2Q9BRP0 275 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 SNHG12Q9BXW3 62 aa8.34□□□□□ -1.07
VPS4A-201ENST00000254950 IGLV4-3A0A075B6K6 122 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.33□□□□□ -1.08
VPS4A-201ENST00000254950 IGHV3-30P01768 117 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 IGHV3-33P01772 117 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 IGHV3-30-3P0DP02 117 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 IGHV3-30-5P0DP03 117 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 CRYBA4P53673 196 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 ZNF561-AS1K7EIQ3 104 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 SIVA1O15304 175 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 LOC100131303A0A0U1RQF7 123 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 A8MTW9 85 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 G3V4G9 280 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 H7C423 109 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 LEPROTO15243 131 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 RETNQ9HD89 108 aa8.33□□□□□ -1.08
VPS4A-201ENST00000254950 IGLL5B9A064 214 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 UBE2D3P61077 147 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 NPC2P61916 151 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 UBE2D2P62837 147 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 PYGO1Q9Y3Y4 419 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 PRSS47A8MTI9 375 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 C1orf43Q9BWL3 253 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 IGLV10-54A0A075B6I4 117 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 E9PLD3 99 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 H3BUT2 72 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 CRYBG3Q68DQ2 2970 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 APCP25054 2843 aa8.32□□□□□ -1.08
VPS4A-201ENST00000254950 NPSP0C0P6 89 aa8.31□□□□□ -1.08
VPS4A-201ENST00000254950 KLK12Q9UKR0 248 aa8.31□□□□□ -1.08
VPS4A-201ENST00000254950 IGKV2D-24A0A075B6R9 120 aa8.31□□□□□ -1.08
VPS4A-201ENST00000254950 DPH3Q96FX2 82 aa8.31□□□□□ -1.08
VPS4A-201ENST00000254950 TRAV10A0A0B4J240 114 aa8.31□□□□□ -1.08
VPS4A-201ENST00000254950 IL17DQ8TAD2 202 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 Q9HAA7 133 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 DCHS2Q6V1P9 2916 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 HRNRQ86YZ3 2850 aaPredicted RBP8.3□□□□□ -1.08
VPS4A-201ENST00000254950 COX7A2LO14548 114 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 KLK5Q9Y337 293 aaPredicted RBP8.3□□□□□ -1.08
VPS4A-201ENST00000254950 A0A0J9YWU9 116 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 FHL2Q14192 279 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 TAL2Q16559 108 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 Q9H8V8 135 aa8.3□□□□□ -1.08
VPS4A-201ENST00000254950 MUC4Q99102 2169 aa8.29□□□□□ -1.08
VPS4A-201ENST00000254950 PFN2P35080 140 aa8.29□□□□□ -1.08
VPS4A-201ENST00000254950 ERG28Q9UKR5 140 aa8.29□□□□□ -1.08
VPS4A-201ENST00000254950 LINC00315P59091 139 aa8.29□□□□□ -1.08
VPS4A-201ENST00000254950 KPRPQ5T749 579 aaPredicted RBP8.29□□□□□ -1.08
VPS4A-201ENST00000254950 TTTY13Q9BZ97 58 aa8.29□□□□□ -1.08
VPS4A-201ENST00000254950 RPL13AP40429 203 aaKnown RBP8.29□□□□□ -1.08
VPS4A-201ENST00000254950 IGLV2-18A0A075B6J9 118 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 TINCRA0A1B0GVN0 87 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 SPCS1Q9Y6A9 102 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 CCL25O15444 150 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 SFTA2Q6UW10 78 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 Q6ZSN1 163 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 BOD1L2Q8IYS8 172 aa8.28□□□□□ -1.08
VPS4A-201ENST00000254950 HERV-K104P63124 156 aa8.27□□□□□ -1.08
VPS4A-201ENST00000254950 Q8N976 141 aa8.27□□□□□ -1.09
VPS4A-201ENST00000254950 IGHV1-58A0A0C4DH39 117 aa8.27□□□□□ -1.09
VPS4A-201ENST00000254950 DLEU1O43261 78 aa8.27□□□□□ -1.09
VPS4A-201ENST00000254950 NANOS2P60321 138 aaKnown RBP8.27□□□□□ -1.09
VPS4A-201ENST00000254950 RBX1P62877 108 aa8.27□□□□□ -1.09
VPS4A-201ENST00000254950 UBE2D4Q9Y2X8 147 aa8.27□□□□□ -1.09
VPS4A-201ENST00000254950 IGIPA6NJ69 53 aa8.27□□□□□ -1.09
VPS4A-201ENST00000254950 A0A096LNJ9 63 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 LINC00269Q8N2A0 174 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 C19orf73Q9NVV2 129 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 ZNF22P17026 224 aaPredicted RBP8.26□□□□□ -1.09
VPS4A-201ENST00000254950 MRPS36P82909 103 aaKnown RBP8.26□□□□□ -1.09
VPS4A-201ENST00000254950 BVES-AS1Q5T3Y7 98 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 SAMD5Q5TGI4 173 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 TRAV8-3A0A0A6YYJ7 113 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 DNAL4O96015 105 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 LELP1Q5T871 98 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 C15orf53Q8NAA6 179 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 CDKN2A-AS1Q9UH64 79 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 X6R8D5 127 aa8.26□□□□□ -1.09
VPS4A-201ENST00000254950 REG3AQ06141 175 aa8.25□□□□□ -1.09
VPS4A-201ENST00000254950 COX7B2Q8TF08 81 aa8.25□□□□□ -1.09
VPS4A-201ENST00000254950 S100A7L2Q5SY68 101 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms