RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 FLT1P17948 1338 aa15.9■□□□□ 0.14
GTF3A-209ENST00000640289 SSC5DA1L4H1 1573 aa15.89■□□□□ 0.13
GTF3A-209ENST00000640289 DDTLA6NHG4 134 aaPredicted RBP15.89■□□□□ 0.13
GTF3A-209ENST00000640289 USP5P45974 858 aa15.89■□□□□ 0.13
GTF3A-209ENST00000640289 CCDC129Q6ZRS4 1044 aa15.89■□□□□ 0.13
GTF3A-209ENST00000640289 CRNKL1Q9BZJ0 848 aaKnown RBP15.89■□□□□ 0.13
GTF3A-209ENST00000640289 OSBPL5Q9H0X9 879 aaPredicted RBP15.89■□□□□ 0.13
GTF3A-209ENST00000640289 GPAA1O43292 621 aa15.88■□□□□ 0.13
GTF3A-209ENST00000640289 PRKG1Q13976 671 aa15.88■□□□□ 0.13
GTF3A-209ENST00000640289 STRBPQ96SI9 672 aaKnown RBP15.88■□□□□ 0.13
GTF3A-209ENST00000640289 SLC4A4Q9Y6R1 1079 aa15.88■□□□□ 0.13
GTF3A-209ENST00000640289 RPAP1Q9BWH6 1393 aaPredicted RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 POLR2AP24928 1970 aaKnown RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 NPM3O75607 178 aaKnown RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 SLURP2P0DP57 97 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 APLP1P51693 650 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 SLC4A8Q2Y0W8 1093 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 BMP2KLQ5H9B9 411 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 CWC27Q6UX04 472 aaKnown RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 MOB2Q70IA6 237 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 ZSCAN29Q8IWY8 852 aaPredicted RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 GBA2Q9HCG7 927 aaPredicted RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 HELLSQ9NRZ9 838 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 DIAPH3Q9NSV4 1193 aa15.87■□□□□ 0.13
GTF3A-209ENST00000640289 MKRN1Q9UHC7 482 aaKnown RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 SAP30BPQ9UHR5 308 aaKnown RBP15.87■□□□□ 0.13
GTF3A-209ENST00000640289 MYH7P12883 1935 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 TMEM88BA6NKF7 163 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 NF2P35240 595 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 HTRA3P83110 453 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 SUPT20HL1Q3ZLR7 823 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 MCMDC2Q4G0Z9 681 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 ZNF589Q86UQ0 364 aaPredicted RBP15.86■□□□□ 0.13
GTF3A-209ENST00000640289 TICAM2Q86XR7 235 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 CSRNP1Q96S65 589 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 IL25Q9H293 177 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 DCP1AQ9NPI6 582 aaPredicted RBP15.86■□□□□ 0.13
GTF3A-209ENST00000640289 PALD1Q9ULE6 856 aa15.86■□□□□ 0.13
GTF3A-209ENST00000640289 GSG1L2A8MUP6 293 aa15.85■□□□□ 0.13
GTF3A-209ENST00000640289 HIP1O00291 1037 aa15.85■□□□□ 0.13
GTF3A-209ENST00000640289 CHMLP26374 656 aa15.85■□□□□ 0.13
GTF3A-209ENST00000640289 MIGA2Q7L4E1 593 aa15.85■□□□□ 0.13
GTF3A-209ENST00000640289 ATRNL1Q5VV63 1379 aa15.85■□□□□ 0.13
GTF3A-209ENST00000640289 HSPA6P17066 643 aa15.84■□□□□ 0.13
GTF3A-209ENST00000640289 EVX2Q03828 476 aa15.84■□□□□ 0.13
GTF3A-209ENST00000640289 TTLL12Q14166 644 aaPredicted RBP15.84■□□□□ 0.13
GTF3A-209ENST00000640289 VPS53Q5VIR6 699 aa15.84■□□□□ 0.13
GTF3A-209ENST00000640289 C2orf69Q8N8R5 385 aa15.84■□□□□ 0.13
GTF3A-209ENST00000640289 EPB41L4AQ9HCS5 686 aaPredicted RBP15.84■□□□□ 0.13
GTF3A-209ENST00000640289 MCM9Q9NXL9 1143 aa15.84■□□□□ 0.13
GTF3A-209ENST00000640289 COL2A1P02458 1487 aaPredicted RBP15.84■□□□□ 0.13
GTF3A-209ENST00000640289 FAM196BA6NMK8 535 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 FOXP2O15409 715 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 USP2O75604 605 aaPredicted RBP15.83■□□□□ 0.12
GTF3A-209ENST00000640289 CYP2D6P10635 497 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 GNAT2P19087 354 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 DHX36Q9H2U1 1008 aaKnown RBP15.83■□□□□ 0.12
GTF3A-209ENST00000640289 CREBZFQ9NS37 354 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 ATP8A2Q9NTI2 1148 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 ABT1Q9ULW3 272 aaKnown RBP15.83■□□□□ 0.12
GTF3A-209ENST00000640289 ANGEL1Q9UNK9 670 aaKnown RBP15.83■□□□□ 0.12
GTF3A-209ENST00000640289 CCDC171Q6TFL3 1326 aa15.83■□□□□ 0.12
GTF3A-209ENST00000640289 CYP2D7A0A087X1C5 515 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 PATL2C9JE40 543 aaKnown RBP15.82■□□□□ 0.12
GTF3A-209ENST00000640289 UBE2Q2LH0YL09 131 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 SMIM22K7EJ46 135 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 APPP05067 770 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 POLR3DP05423 398 aaPredicted RBP15.82■□□□□ 0.12
GTF3A-209ENST00000640289 PLCD1P51178 756 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 SAPCD2Q86UD0 394 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 IFNL3Q8IZI9 196 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 TLL2Q9Y6L7 1015 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 CDK5RAP2Q96SN8 1893 aa15.82■□□□□ 0.12
GTF3A-209ENST00000640289 USP17L12C9JPN9 530 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 USP17L21D6R901 530 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 PPP1R12BO60237 982 aaPredicted RBP15.81■□□□□ 0.12
GTF3A-209ENST00000640289 HLA-DOAP06340 250 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 HUNKP57058 714 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 FKBP1BP68106 108 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 MAP3K11Q16584 847 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 FOCADQ5VW36 1801 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 DCAF15Q66K64 600 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 CTR9Q6PD62 1173 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 ARMC9Q7Z3E5 817 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 HOOK2Q96ED9 719 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 DNAJC18Q9H819 358 aa15.81■□□□□ 0.12
GTF3A-209ENST00000640289 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.81■□□□□ 0.12
GTF3A-209ENST00000640289 PAPPA2Q9BXP8 1791 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 DDX60LQ5H9U9 1706 aaKnown RBP15.8■□□□□ 0.12
GTF3A-209ENST00000640289 HSPD1P10809 573 aaKnown RBP15.8■□□□□ 0.12
GTF3A-209ENST00000640289 IREB2P48200 963 aaKnown RBP15.8■□□□□ 0.12
GTF3A-209ENST00000640289 TDO2P48775 406 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 MAP3K10Q02779 954 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 TTC6Q86TZ1 520 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 KLRG1Q96E93 195 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 DDRGK1Q96HY6 314 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 ZNF341Q9BYN7 854 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.8■□□□□ 0.12
GTF3A-209ENST00000640289 PI4KBQ9UBF8 816 aa15.8■□□□□ 0.12
GTF3A-209ENST00000640289 AK9Q5TCS8 1911 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms