RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FER1L6Q2WGJ9 1857 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 CRKP46108 304 aa23.8■■□□□ 1.4
CLN3-250ENST00000636839 RRP12Q5JTH9 1297 aaKnown RBP23.8■■□□□ 1.4
CLN3-250ENST00000636839 APOBEC3HQ6NTF7 200 aaKnown RBP23.8■■□□□ 1.4
CLN3-250ENST00000636839 GIMAP6Q6P9H5 292 aa23.8■■□□□ 1.4
CLN3-250ENST00000636839 NIM1KQ8IY84 436 aa23.8■■□□□ 1.4
CLN3-250ENST00000636839 ALDH8A1Q9H2A2 487 aaPredicted RBP23.8■■□□□ 1.4
CLN3-250ENST00000636839 ZNRF3Q9ULT6 936 aa23.8■■□□□ 1.4
CLN3-250ENST00000636839 PRC1O43663 620 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 ST3GAL1Q11201 340 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 CUL4AQ13619 759 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 RALYLQ86SE5 291 aaKnown RBP23.79■■□□□ 1.4
CLN3-250ENST00000636839 TEKT1Q969V4 418 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 DDIT3P35638 169 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 FKBP1AP62942 108 aaKnown RBP23.79■■□□□ 1.4
CLN3-250ENST00000636839 MFSD6Q6ZSS7 791 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 STAG1Q8WVM7 1258 aa23.79■■□□□ 1.4
CLN3-250ENST00000636839 PRDM1O75626 825 aa23.78■■□□□ 1.4
CLN3-250ENST00000636839 FGD1P98174 961 aa23.78■■□□□ 1.4
CLN3-250ENST00000636839 STK3Q13188 491 aa23.78■■□□□ 1.4
CLN3-250ENST00000636839 TOMM22Q9NS69 142 aa23.78■■□□□ 1.4
CLN3-250ENST00000636839 KDM4AO75164 1064 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 MCM5P33992 734 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 CXCL9Q07325 125 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 APOBRQ0VD83 1088 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 TRDNQ13061 729 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 HHIPL2Q6UWX4 724 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 VPS33BQ9H267 617 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 USP40Q9NVE5 1235 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 ZSWIM5Q9P217 1185 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 ANAPC4Q9UJX5 808 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 VIL1P09327 827 aaKnown RBP23.77■■□□□ 1.4
CLN3-250ENST00000636839 RBM5P52756 815 aaKnown RBP eCLIP23.77■■□□□ 1.4
CLN3-250ENST00000636839 CDC42EP5Q6NZY7 148 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 RSBN1LQ6PCB5 846 aaPredicted RBP23.77■■□□□ 1.4
CLN3-250ENST00000636839 SYT17Q9BSW7 474 aa23.77■■□□□ 1.4
CLN3-250ENST00000636839 PLCD1P51178 756 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 PICALMQ13492 652 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 CCDC83Q8IWF9 413 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 SENP2Q9HC62 589 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 DDX4Q9NQI0 724 aaKnown RBP23.76■■□□□ 1.39
CLN3-250ENST00000636839 FLT1P17948 1338 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 CACNB3P54284 484 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 DYNLL2Q96FJ2 89 aa23.76■■□□□ 1.39
CLN3-250ENST00000636839 WDHD1O75717 1129 aaPredicted RBP23.75■■□□□ 1.39
CLN3-250ENST00000636839 ANKRD1Q15327 319 aa23.75■■□□□ 1.39
CLN3-250ENST00000636839 IL27Q8NEV9 243 aa23.75■■□□□ 1.39
CLN3-250ENST00000636839 ZDHHC15Q96MV8 337 aa23.75■■□□□ 1.39
CLN3-250ENST00000636839 GMLQ99445 158 aa23.75■■□□□ 1.39
CLN3-250ENST00000636839 ZKSCAN3Q9BRR0 538 aa23.75■■□□□ 1.39
CLN3-250ENST00000636839 AGXT2Q9BYV1 514 aa23.75■■□□□ 1.39
CLN3-250ENST00000636839 PLCG2P16885 1265 aa23.74■■□□□ 1.39
CLN3-250ENST00000636839 SBK1Q52WX2 424 aa23.74■■□□□ 1.39
CLN3-250ENST00000636839 C12orf60Q5U649 245 aa23.74■■□□□ 1.39
CLN3-250ENST00000636839 JDP2Q8WYK2 163 aa23.74■■□□□ 1.39
CLN3-250ENST00000636839 NFIAQ12857 509 aa23.74■■□□□ 1.39
CLN3-250ENST00000636839 ARPP21Q9UBL0 812 aaPredicted RBP23.74■■□□□ 1.39
CLN3-250ENST00000636839 CDK5RAP2Q96SN8 1893 aa23.74■■□□□ 1.39
CLN3-250ENST00000636839 TIAM2Q8IVF5 1701 aa23.73■■□□□ 1.39
CLN3-250ENST00000636839 ZSCAN31Q96LW9 406 aaPredicted RBP23.73■■□□□ 1.39
CLN3-250ENST00000636839 BRPF3Q9ULD4 1205 aa23.73■■□□□ 1.39
CLN3-250ENST00000636839 SHTN1A0MZ66 631 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 ARHGAP27Q6ZUM4 889 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 RAB11FIP4Q86YS3 637 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 PRMT6Q96LA8 375 aaPredicted RBP23.72■■□□□ 1.39
CLN3-250ENST00000636839 MRIQ9BWK5 157 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 SERPINA10Q9UK55 444 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 POLR3DP05423 398 aaPredicted RBP23.72■■□□□ 1.39
CLN3-250ENST00000636839 PKP1Q13835 747 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 CFAP100Q494V2 611 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 ZFPM1Q8IX07 1006 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 SLC44A5Q8NCS7 719 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 KRT23Q9C075 422 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 CNNM2Q9H8M5 875 aa23.72■■□□□ 1.39
CLN3-250ENST00000636839 NAP1L2Q9ULW6 460 aaPredicted RBP23.72■■□□□ 1.39
CLN3-250ENST00000636839 CERS3Q8IU89 383 aa23.71■■□□□ 1.39
CLN3-250ENST00000636839 IGDCC4Q8TDY8 1250 aa23.71■■□□□ 1.39
CLN3-250ENST00000636839 RNF41Q9H4P4 317 aaPredicted RBP23.71■■□□□ 1.39
CLN3-250ENST00000636839 SH2B1Q9NRF2 756 aaPredicted RBP23.71■■□□□ 1.39
CLN3-250ENST00000636839 LTBP3Q9NS15 1303 aa23.71■■□□□ 1.39
CLN3-250ENST00000636839 FGRP09769 529 aa23.71■■□□□ 1.39
CLN3-250ENST00000636839 HDLBPQ00341 1268 aaKnown RBP23.71■■□□□ 1.39
CLN3-250ENST00000636839 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.71■■□□□ 1.39
CLN3-250ENST00000636839 PSME4Q14997 1843 aa23.7■■□□□ 1.38
CLN3-250ENST00000636839 RANBP6O60518 1105 aaKnown RBP23.7■■□□□ 1.38
CLN3-250ENST00000636839 FAM47AQ5JRC9 791 aa23.7■■□□□ 1.38
CLN3-250ENST00000636839 TDRD3Q9H7E2 651 aaKnown RBP23.7■■□□□ 1.38
CLN3-250ENST00000636839 ARFGEF1Q9Y6D6 1849 aa23.7■■□□□ 1.38
CLN3-250ENST00000636839 SH2B2O14492 632 aaPredicted RBP23.69■■□□□ 1.38
CLN3-250ENST00000636839 SLURP2P0DP57 97 aa23.69■■□□□ 1.38
CLN3-250ENST00000636839 CCT2P78371 535 aaKnown RBP23.69■■□□□ 1.38
CLN3-250ENST00000636839 CIAPIN1Q6FI81 312 aa23.69■■□□□ 1.38
CLN3-250ENST00000636839 FBXL16Q8N461 479 aa23.69■■□□□ 1.38
CLN3-250ENST00000636839 INTS4Q96HW7 963 aaKnown RBP23.69■■□□□ 1.38
CLN3-250ENST00000636839 NCOA5Q9HCD5 579 aaKnown RBP23.69■■□□□ 1.38
CLN3-250ENST00000636839 YBX3P16989 372 aaKnown RBP eCLIP23.69■■□□□ 1.38
CLN3-250ENST00000636839 PDIA3P30101 505 aaKnown RBP23.69■■□□□ 1.38
CLN3-250ENST00000636839 SCRN1Q12765 414 aa23.69■■□□□ 1.38
CLN3-250ENST00000636839 CHMP5Q9NZZ3 219 aa23.69■■□□□ 1.38
CLN3-250ENST00000636839 NAV1Q8NEY1 1877 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms