RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 BMP15O95972 392 aa11.53□□□□□ -0.56
SMARCA1-205ENST00000617310 AXDND1Q5T1B0 1012 aaPredicted RBP11.53□□□□□ -0.56
SMARCA1-205ENST00000617310 STXBP4Q6ZWJ1 553 aa11.53□□□□□ -0.56
SMARCA1-205ENST00000617310 PRKAB2O43741 272 aa11.52□□□□□ -0.56
SMARCA1-205ENST00000617310 TRIM21P19474 475 aaKnown RBP11.52□□□□□ -0.56
SMARCA1-205ENST00000617310 PTGS1P23219 599 aa11.52□□□□□ -0.56
SMARCA1-205ENST00000617310 UBE4AQ14139 1066 aa11.52□□□□□ -0.56
SMARCA1-205ENST00000617310 SLFNL1Q499Z3 407 aa11.52□□□□□ -0.56
SMARCA1-205ENST00000617310 IBTKQ9P2D0 1353 aaPredicted RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 RPS6KA4O75676 772 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 ADCY5O95622 1261 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 ZNF853P0CG23 659 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 FAM193AP78312 1265 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 MKRN3Q13064 507 aaKnown RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 VPS36Q86VN1 386 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 AOPEPQ8N6M6 819 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 TTLL11Q8NHH1 800 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 NOP2P46087 812 aaKnown RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 KLHL40Q2TBA0 621 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 KIF4BQ2VIQ3 1234 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 GPIHBP1Q8IV16 184 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 ARHGEF1Q92888 912 aaKnown RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 CYP2D7A0A087X1C5 515 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 FAM13AO94988 1023 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 MYCP01106 439 aaPredicted RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 IGKV5-2P06315 115 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 PTPN12Q05209 780 aaKnown RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 CCDC150Q8NCX0 1101 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 CTNNBL1Q8WYA6 563 aaPredicted RBP11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 BEGAINQ9BUH8 593 aa11.52□□□□□ -0.57
SMARCA1-205ENST00000617310 URI1O94763 535 aaPredicted RBP11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 DEXIO95424 95 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 PRPF4BQ13523 1007 aaKnown RBP11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 ZSCAN23Q3MJ62 389 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 KANK3Q6NY19 840 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 C16orf45Q96MC5 204 aaPredicted RBP11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 NOD1Q9Y239 953 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 PSMA7O14818 248 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 AKR1B10O60218 316 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 CCNT1O60563 726 aaKnown RBP11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 ALAS1P13196 640 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 ARID4AP29374 1257 aaPredicted RBP11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 ZNF654Q8IZM8 581 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 SNX21Q969T3 373 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 ZNF830Q96NB3 372 aaPredicted RBP11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 HAUS7Q99871 368 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 TNKSO95271 1327 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 KDM2BQ8NHM5 1336 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 TNFAIP1Q13829 316 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 CSRNP1Q96S65 589 aa11.51□□□□□ -0.57
SMARCA1-205ENST00000617310 TMCO5BA8MYB1 307 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 B4DLN1 442 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 GDF11O95390 407 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 CERKLQ49MI3 558 aaPredicted RBP11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 KRT40Q6A162 431 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 MIGA2Q7L4E1 593 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 PNMA1Q8ND90 353 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 CELF1Q92879 486 aaKnown RBP11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 ERCC4Q92889 916 aaPredicted RBP11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 RBM28Q9NW13 759 aaKnown RBP11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 THRAP3Q9Y2W1 955 aaKnown RBP11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 BBOX1O75936 387 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 ZSWIM4Q9H7M6 989 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 DEPDC5O75140 1603 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 KIF1BO60333 1816 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 YEATS4O95619 227 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 DESP17661 470 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 UBASH3AP57075 661 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 ICA1Q05084 483 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 TBC1D9BQ66K14 1250 aa11.5□□□□□ -0.57
SMARCA1-205ENST00000617310 FAM170AA1A519 330 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 ZNF771Q7L3S4 317 aaPredicted RBP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 ZNF589Q86UQ0 364 aaPredicted RBP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 TTLL6Q8N841 843 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 TNS3Q68CZ2 1445 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 NOP56O00567 594 aaKnown RBP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 CCT6AP40227 531 aaKnown RBP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 NCAPH2Q6IBW4 605 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 GADL1Q6ZQY3 521 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 HS2ST1Q7LGA3 356 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 DCPSQ96C86 337 aaKnown RBP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 CHAMP1Q96JM3 812 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 RNF216Q9NWF9 866 aaPredicted RBP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 CLTCL1P53675 1640 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 SASH1O94885 1247 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 TAX1BP1Q86VP1 789 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 RASEFQ8IZ41 740 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 RGS22Q8NE09 1264 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 GPKOWQ92917 476 aaPredicted RBP eCLIP11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 DRC1Q96MC2 740 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 HSPA4P34932 840 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 PTPN14Q15678 1187 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 SIRT2Q8IXJ6 389 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 ACBD3Q9H3P7 528 aa11.49□□□□□ -0.57
SMARCA1-205ENST00000617310 C1orf167Q5SNV9 1468 aa11.48□□□□□ -0.57
SMARCA1-205ENST00000617310 CCDC169A6NNP5 214 aa11.48□□□□□ -0.57
SMARCA1-205ENST00000617310 RASGRF1Q13972 1273 aa11.48□□□□□ -0.57
SMARCA1-205ENST00000617310 ME3Q16798 604 aa11.48□□□□□ -0.57
SMARCA1-205ENST00000617310 IQUBQ8NA54 791 aa11.48□□□□□ -0.57
SMARCA1-205ENST00000617310 ARPP21Q9UBL0 812 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms