RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 DEXIO95424 95 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 CALM1P0DP23 149 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 CALM2P0DP24 149 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 CALM3P0DP25 149 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 DIS3L2Q8IYB7 885 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 SNAP23O00161 211 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 SYCP1Q15431 976 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 PTPN21Q16825 1174 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 SUSD4Q5VX71 490 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 CACNA2D4Q7Z3S7 1137 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 IL25Q9H293 177 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 BLZF1Q9H2G9 400 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 N4BP3O15049 544 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 CCNT1O60563 726 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 ZNF202O95125 648 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 TNNI2P48788 182 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 KARSQ15046 597 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 KIF4BQ2VIQ3 1234 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 ATG3Q9NT62 314 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 RRP9O43818 475 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 COBLO75128 1261 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 PARP1P09874 1014 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 CCT6AP40227 531 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 ZNF75DP51815 510 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 UBXN4Q92575 508 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 STAMQ92783 540 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 SRP68Q9UHB9 627 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 ZMYM6O95789 1325 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 YEATS4O95619 227 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 TTC6Q86TZ1 520 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 VEZTQ9HBM0 779 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 KCNH3Q9ULD8 1083 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 LETM2Q2VYF4 491 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 LCORLQ8N3X6 602 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 GGA1Q9UJY5 639 aa10.18□□□□□ -0.78
PDLIM5-222ENST00000615540 NEMFO60524 1076 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 ASIC1P78348 528 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 RBM26Q5T8P6 1007 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 FOXO4P98177 505 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 TOB2Q14106 344 aaPredicted RBP10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 NECTIN1Q15223 517 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 SPA17Q15506 151 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 AKNAD1Q5T1N1 836 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 TRMT44Q8IYL2 757 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 ATP10DQ9P241 1426 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 PDE8BO95263 885 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 GNG11P61952 73 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 CCDC40Q4G0X9 1142 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 CCDC148Q8NFR7 591 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 ACBD3Q9H3P7 528 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 MED23Q9ULK4 1368 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 H7C1W4 665 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 TCP10Q12799 353 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 GIGYF2Q6Y7W6 1299 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 DNAI1Q9UI46 699 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 CYP2D7A0A087X1C5 515 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 MCAMP43121 646 aa10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 TDRD12Q587J7 1177 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 ZSCAN10Q96SZ4 725 aaPredicted RBP10.17□□□□□ -0.78
PDLIM5-222ENST00000615540 CARMIL3Q8ND23 1372 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 FRMPD2Q68DX3 1309 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 NBPF26B4DH59 902 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 NDUFA8P51970 172 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 NBPF14Q5TI25 921 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 NBPF10Q6P3W6 841 aaKnown RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 NBPF15Q8N660 670 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 AXDND1Q5T1B0 1012 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 GPKOWQ92917 476 aaPredicted RBP eCLIP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 CCDC102AQ96A19 550 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 FEZ1Q99689 392 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 RAB34Q9BZG1 259 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 GOLGA8HP0CJ92 632 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 PFKFB1P16118 471 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 NSUN7Q8NE18 718 aaKnown RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 ZNF274Q96GC6 653 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 C6orf50Q9HD87 102 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 RNF216Q9NWF9 866 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 FSD2A1L4K1 749 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 ERCC3P19447 782 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 CUL4AQ13619 759 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 SYT10Q6XYQ8 523 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 ZC3H12CQ9C0D7 883 aaKnown RBP10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 CENPHQ9H3R5 247 aa10.16□□□□□ -0.78
PDLIM5-222ENST00000615540 USP17L12C9JPN9 530 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 USP17L21D6R901 530 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 ADD2P35612 726 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 UBXN1Q04323 297 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 ODF2Q5BJF6 829 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 CHMP4BP1P59074 171 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 AMPD3Q01432 767 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 DRC1Q96MC2 740 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 GJB4Q9NTQ9 266 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 RMND1Q9NWS8 449 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 PCDHA7Q9UN72 937 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 MRVI1Q9Y6F6 885 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 POLR3GO15318 223 aaPredicted RBP10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 NLRP12P59046 1061 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 JAKMIP3Q5VZ66 844 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 ZNF654Q8IZM8 581 aa10.15□□□□□ -0.78
PDLIM5-222ENST00000615540 LZTFL1Q9NQ48 299 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms