RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 USP40Q9NVE5 1235 aa36.24■■■■□ 3.39
CTCF-203ENST00000566078 MCM9Q9NXL9 1143 aa36.24■■■■□ 3.39
CTCF-203ENST00000566078 SRCAPQ6ZRS2 3230 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 CYP2D7A0A087X1C5 515 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 USP17L12C9JPN9 530 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 USP17L21D6R901 530 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 FZD9O00144 591 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 MCM2P49736 904 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 TCEANC2Q96MN5 208 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 HDAC9Q9UKV0 1011 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 FLT1P17948 1338 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 MYH8P13535 1937 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 AK2P54819 239 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 CFAP100Q494V2 611 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 CDC42EP5Q6NZY7 148 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 NOL8Q76FK4 1167 aaKnown RBP36.23■■■■□ 3.39
CTCF-203ENST00000566078 RALYLQ86SE5 291 aaKnown RBP36.23■■■■□ 3.39
CTCF-203ENST00000566078 NCOA7Q8NI08 942 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 ANAPC4Q9UJX5 808 aa36.23■■■■□ 3.39
CTCF-203ENST00000566078 NEDD4P46934 1319 aa36.21■■■■□ 3.39
CTCF-203ENST00000566078 USP17L8P0C7I0 530 aa36.21■■■■□ 3.39
CTCF-203ENST00000566078 TRDNQ13061 729 aa36.21■■■■□ 3.39
CTCF-203ENST00000566078 SBK1Q52WX2 424 aa36.21■■■■□ 3.39
CTCF-203ENST00000566078 AKNAD1Q5T1N1 836 aa36.21■■■■□ 3.39
CTCF-203ENST00000566078 STAG1Q8WVM7 1258 aa36.21■■■■□ 3.39
CTCF-203ENST00000566078 DHX32Q7L7V1 743 aaKnown RBP36.2■■■■□ 3.39
CTCF-203ENST00000566078 OGFOD1Q8N543 542 aa36.2■■■■□ 3.39
CTCF-203ENST00000566078 CYP2D6P10635 497 aa36.19■■■■□ 3.38
CTCF-203ENST00000566078 MB21D2Q8IYB1 491 aaPredicted RBP36.19■■■■□ 3.38
CTCF-203ENST00000566078 STK11IPQ8N1F8 1099 aa36.19■■■■□ 3.38
CTCF-203ENST00000566078 ZNF541Q9H0D2 1346 aa36.19■■■■□ 3.38
CTCF-203ENST00000566078 MFSD6Q6ZSS7 791 aa36.19■■■■□ 3.38
CTCF-203ENST00000566078 AMOTL1Q8IY63 956 aa36.19■■■■□ 3.38
CTCF-203ENST00000566078 SAP30BPQ9UHR5 308 aaKnown RBP36.19■■■■□ 3.38
CTCF-203ENST00000566078 TACC3Q9Y6A5 838 aa36.19■■■■□ 3.38
CTCF-203ENST00000566078 SMIM22K7EJ46 135 aa36.18■■■■□ 3.38
CTCF-203ENST00000566078 WDHD1O75717 1129 aaPredicted RBP36.18■■■■□ 3.38
CTCF-203ENST00000566078 PICALMQ13492 652 aa36.18■■■■□ 3.38
CTCF-203ENST00000566078 SLC4A8Q2Y0W8 1093 aa36.18■■■■□ 3.38
CTCF-203ENST00000566078 RNF41Q9H4P4 317 aaPredicted RBP36.18■■■■□ 3.38
CTCF-203ENST00000566078 INCENPQ9NQS7 918 aa36.18■■■■□ 3.38
CTCF-203ENST00000566078 EVX2Q03828 476 aa36.17■■■■□ 3.38
CTCF-203ENST00000566078 ALDH8A1Q9H2A2 487 aaPredicted RBP36.17■■■■□ 3.38
CTCF-203ENST00000566078 CNNM2Q9H8M5 875 aa36.17■■■■□ 3.38
CTCF-203ENST00000566078 GJA3Q9Y6H8 435 aa36.16■■■■□ 3.38
CTCF-203ENST00000566078 RPS12P25398 132 aaKnown RBP36.16■■■■□ 3.38
CTCF-203ENST00000566078 EXOSC10Q01780 885 aaKnown RBP36.16■■■■□ 3.38
CTCF-203ENST00000566078 DDX4Q9NQI0 724 aaKnown RBP36.16■■■■□ 3.38
CTCF-203ENST00000566078 UTRNP46939 3433 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 B4E1Z4 1266 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 MCM5P33992 734 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 C12orf60Q5U649 245 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 Q6ZUG5 572 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 CHST3Q7LGC8 479 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 LRRC2Q9BYS8 371 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 KRT23Q9C075 422 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 TOMM22Q9NS69 142 aa36.15■■■■□ 3.38
CTCF-203ENST00000566078 POLR3DP05423 398 aaPredicted RBP36.14■■■■□ 3.38
CTCF-203ENST00000566078 DLGAP5Q15398 846 aa36.14■■■■□ 3.38
CTCF-203ENST00000566078 ROBO3Q96MS0 1386 aa36.14■■■■□ 3.38
CTCF-203ENST00000566078 SLC3A2P08195 630 aaKnown RBP36.13■■■■□ 3.37
CTCF-203ENST00000566078 TOB2Q14106 344 aaPredicted RBP36.13■■■■□ 3.37
CTCF-203ENST00000566078 ANKRD1Q15327 319 aa36.13■■■■□ 3.37
CTCF-203ENST00000566078 RRP12Q5JTH9 1297 aaKnown RBP36.13■■■■□ 3.37
CTCF-203ENST00000566078 PRMT6Q96LA8 375 aaPredicted RBP36.13■■■■□ 3.37
CTCF-203ENST00000566078 LARP6Q9BRS8 491 aaKnown RBP36.13■■■■□ 3.37
CTCF-203ENST00000566078 SPDYE2BA6NHP3 402 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 PRC1O43663 620 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 SPDYE6P0CI01 402 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 NKX2-3Q8TAU0 364 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 TDRD3Q9H7E2 651 aaKnown RBP36.12■■■■□ 3.37
CTCF-203ENST00000566078 LIMCH1Q9UPQ0 1083 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 SIPA1L1O43166 1804 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 GMPSP49915 693 aaPredicted RBP36.12■■■■□ 3.37
CTCF-203ENST00000566078 CACNB3P54284 484 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 ANTXR2P58335 489 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 FGD1P98174 961 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 GPR162Q16538 588 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 SPRYD3Q8NCJ5 442 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 TMX3Q96JJ7 454 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 RNF181Q9P0P0 153 aa36.12■■■■□ 3.37
CTCF-203ENST00000566078 WDR19Q8NEZ3 1342 aa36.11■■■■□ 3.37
CTCF-203ENST00000566078 NFIAQ12857 509 aa36.11■■■■□ 3.37
CTCF-203ENST00000566078 CYB5R4Q7L1T6 521 aa36.11■■■■□ 3.37
CTCF-203ENST00000566078 PCP11498 1178 aaKnown RBP36.1■■■■□ 3.37
CTCF-203ENST00000566078 OSBPL5Q9H0X9 879 aaPredicted RBP36.1■■■■□ 3.37
CTCF-203ENST00000566078 SHTN1A0MZ66 631 aa36.09■■■■□ 3.37
CTCF-203ENST00000566078 KDM4AO75164 1064 aa36.09■■■■□ 3.37
CTCF-203ENST00000566078 MTMR14Q8NCE2 650 aa36.09■■■■□ 3.37
CTCF-203ENST00000566078 IDI2Q9BXS1 227 aa36.09■■■■□ 3.37
CTCF-203ENST00000566078 DDX52Q9Y2R4 599 aaKnown RBP eCLIP36.09■■■■□ 3.37
CTCF-203ENST00000566078 MMP14P50281 582 aa36.08■■■■□ 3.37
CTCF-203ENST00000566078 PLCD1P51178 756 aa36.08■■■■□ 3.37
CTCF-203ENST00000566078 MYOZ2Q9NPC6 264 aa36.08■■■■□ 3.37
CTCF-203ENST00000566078 HSP90AA1P07900 732 aaKnown RBP36.08■■■■□ 3.37
CTCF-203ENST00000566078 FGRP09769 529 aa36.08■■■■□ 3.37
CTCF-203ENST00000566078 PDE4BQ07343 736 aa36.08■■■■□ 3.37
CTCF-203ENST00000566078 DPF2Q92785 391 aa36.08■■■■□ 3.37
CTCF-203ENST00000566078 PRDM1O75626 825 aa36.07■■■■□ 3.36
CTCF-203ENST00000566078 ZNF280AP59817 542 aaPredicted RBP36.07■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 232.8 ms