RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CLIC4Q9Y696 253 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 ELP1O95163 1332 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 CALM1P0DP23 149 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 CALM2P0DP24 149 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 CALM3P0DP25 149 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 LRMPQ12912 555 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 RILPL1Q5EBL4 403 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 CYP2D7A0A087X1C5 515 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 ERCC3P19447 782 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 SRP68Q9UHB9 627 aaKnown RBP17.09■□□□□ 0.33
CUX1-214ENST00000550008 KIF2AO00139 706 aaPredicted RBP17.09■□□□□ 0.33
CUX1-214ENST00000550008 HS1BP3Q53T59 392 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 AXDND1Q5T1B0 1012 aaPredicted RBP17.09■□□□□ 0.33
CUX1-214ENST00000550008 GPIHBP1Q8IV16 184 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 CCDC148Q8NFR7 591 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 PIH1D3Q9NQM4 214 aaKnown RBP17.09■□□□□ 0.33
CUX1-214ENST00000550008 VWDEQ8N2E2 1590 aa17.09■□□□□ 0.33
CUX1-214ENST00000550008 DYNLL1P63167 89 aaKnown RBP17.08■□□□□ 0.33
CUX1-214ENST00000550008 KARSQ15046 597 aaKnown RBP17.08■□□□□ 0.33
CUX1-214ENST00000550008 CCDC150Q8NCX0 1101 aa17.08■□□□□ 0.33
CUX1-214ENST00000550008 PCDHA7Q9UN72 937 aa17.08■□□□□ 0.33
CUX1-214ENST00000550008 NRKQ7Z2Y5 1582 aa17.08■□□□□ 0.33
CUX1-214ENST00000550008 TNKSO95271 1327 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 RIMBP3CA6NJZ7 1639 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 RIMBP3BA6NNM3 1639 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 RIMBP3Q9UFD9 1639 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 CCT6AP40227 531 aaKnown RBP17.08■□□□□ 0.32
CUX1-214ENST00000550008 ZNF827Q17R98 1081 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 CIAO1O76071 339 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 MCAMP43121 646 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 MYL5Q02045 173 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 ERFEQ4G0M1 354 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 CCDC40Q4G0X9 1142 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 PPP4R3BQ5MIZ7 849 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 PDCL3Q9H2J4 239 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 EXOC1Q9NV70 894 aa17.08■□□□□ 0.32
CUX1-214ENST00000550008 TRIM21P19474 475 aaKnown RBP17.07■□□□□ 0.32
CUX1-214ENST00000550008 CALML3P27482 149 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 SCARF1Q14162 830 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 VEZTQ9HBM0 779 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 YEATS4O95619 227 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 ZNF75DP51815 510 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 TCP10Q12799 353 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 PNOCQ13519 176 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 SPA17Q15506 151 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 RBM26Q5T8P6 1007 aaKnown RBP17.07■□□□□ 0.32
CUX1-214ENST00000550008 ZNF397Q8NF99 534 aaPredicted RBP17.07■□□□□ 0.32
CUX1-214ENST00000550008 FBXO18Q8NFZ0 1043 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 GGA1Q9UJY5 639 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 BMP15O95972 392 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 ATL3Q6DD88 541 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 SYCP1Q15431 976 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 JAKMIP3Q5VZ66 844 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 GPR108Q9NPR9 543 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 TAF6LQ9Y6J9 622 aa17.07■□□□□ 0.32
CUX1-214ENST00000550008 KIAA1210Q9ULL0 1709 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 RASGRF1Q13972 1273 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 MSL1Q68DK7 614 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 DTHD1Q6ZMT9 781 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 DLC1Q96QB1 1528 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 PFKFB1P16118 471 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 TMCO3Q6UWJ1 677 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 NDUFA8P51970 172 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 TOB2Q14106 344 aaPredicted RBP17.06■□□□□ 0.32
CUX1-214ENST00000550008 APOA5Q6Q788 366 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 LCORLQ8N3X6 602 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 CUL5Q93034 780 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 ACBD3Q9H3P7 528 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 LZTFL1Q9NQ48 299 aa17.06■□□□□ 0.32
CUX1-214ENST00000550008 PREX1Q8TCU6 1659 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 ERICH4A6NGS2 130 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 ADD2P35612 726 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 PTPN21Q16825 1174 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 SYT10Q6XYQ8 523 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 IQUBQ8NA54 791 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 RRP36Q96EU6 259 aaKnown RBP17.05■□□□□ 0.32
CUX1-214ENST00000550008 PRIMPOLQ96LW4 560 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 MMRN2Q9H8L6 949 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 C6orf50Q9HD87 102 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 GTF2IP78347 998 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 FANCBQ8NB91 859 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 TSG101Q99816 390 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 KCNQ2O43526 872 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 GOLGA8HP0CJ92 632 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 AMPD3Q01432 767 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 UBE3CQ15386 1083 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 CCDC102AQ96A19 550 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 CEP170BQ9Y4F5 1589 aaPredicted RBP17.05■□□□□ 0.32
CUX1-214ENST00000550008 ODF2Q5BJF6 829 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 DRC1Q96MC2 740 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.05■□□□□ 0.324e-6■■■■□ 23.2
CUX1-214ENST00000550008 CENPHQ9H3R5 247 aa17.05■□□□□ 0.32
CUX1-214ENST00000550008 C1orf167Q5SNV9 1468 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 DYNC1I1O14576 645 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 POLR3GO15318 223 aaPredicted RBP17.04■□□□□ 0.32
CUX1-214ENST00000550008 PARP1P09874 1014 aaKnown RBP17.04■□□□□ 0.32
CUX1-214ENST00000550008 TTC38Q5R3I4 469 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 MFSD14BQ5SR56 506 aa17.04■□□□□ 0.32
CUX1-214ENST00000550008 GPR101Q96P66 508 aaPredicted RBP17.04■□□□□ 0.32
CUX1-214ENST00000550008 VPS16Q9H269 839 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms