RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PRDX5P30044 214 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 FAM198AQ9UFP1 575 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 FBXO3Q9UK99 471 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 DENND2AQ9ULE3 1009 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 GABRQQ9UN88 632 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 ZSWIM8A7E2V4 1837 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 SZT2Q5T011 3432 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 DLL1O00548 723 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 ANP32CO43423 234 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 PTPRAP18433 802 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 DEFB118Q96PH6 123 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 CEP126Q9P2H0 1117 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 PNMA3Q9UL41 463 aa21.09■□□□□ 0.97
VPS29-204ENST00000548259 SALL1Q9NSC2 1324 aa21.08■□□□□ 0.97
VPS29-204ENST00000548259 ATP2B3Q16720 1220 aa21.08■□□□□ 0.97
VPS29-204ENST00000548259 IDI2Q9BXS1 227 aa21.08■□□□□ 0.97
VPS29-204ENST00000548259 TAOK2Q9UL54 1235 aa21.08■□□□□ 0.97
VPS29-204ENST00000548259 AFG3L2Q9Y4W6 797 aa21.08■□□□□ 0.97
VPS29-204ENST00000548259 CTNND1O60716 968 aaKnown RBP21.07■□□□□ 0.96
VPS29-204ENST00000548259 ELNP15502 786 aa21.07■□□□□ 0.96
VPS29-204ENST00000548259 RGS3P49796 1198 aa21.07■□□□□ 0.96
VPS29-204ENST00000548259 NECAB2Q7Z6G3 386 aa21.07■□□□□ 0.96
VPS29-204ENST00000548259 USP44Q9H0E7 712 aa21.07■□□□□ 0.96
VPS29-204ENST00000548259 PHF20L1A8MW92 1017 aa21.06■□□□□ 0.96
VPS29-204ENST00000548259 DZIP1Q86YF9 867 aaKnown RBP21.06■□□□□ 0.96
VPS29-204ENST00000548259 MRPL50Q8N5N7 158 aaKnown RBP21.06■□□□□ 0.96
VPS29-204ENST00000548259 HDAC5Q9UQL6 1122 aa21.06■□□□□ 0.96
VPS29-204ENST00000548259 CIAO1O76071 339 aa21.05■□□□□ 0.96
VPS29-204ENST00000548259 ZFPM1Q8IX07 1006 aa21.05■□□□□ 0.96
VPS29-204ENST00000548259 PAK6Q9NQU5 681 aaPredicted RBP21.05■□□□□ 0.96
VPS29-204ENST00000548259 AGTPBP1Q9UPW5 1226 aa21.05■□□□□ 0.96
VPS29-204ENST00000548259 TRIM75PA6NK02 468 aa21.04■□□□□ 0.96
VPS29-204ENST00000548259 PABPC4Q13310 644 aaKnown RBP eCLIP21.04■□□□□ 0.96
VPS29-204ENST00000548259 SPTY2D1Q68D10 685 aaPredicted RBP21.04■□□□□ 0.96
VPS29-204ENST00000548259 ANKLE1Q8NAG6 615 aa21.04■□□□□ 0.96
VPS29-204ENST00000548259 RFX5P48382 616 aaPredicted RBP21.03■□□□□ 0.96
VPS29-204ENST00000548259 MAP3K10Q02779 954 aa21.03■□□□□ 0.96
VPS29-204ENST00000548259 FAM110CQ1W6H9 321 aa21.03■□□□□ 0.96
VPS29-204ENST00000548259 PAWRQ96IZ0 340 aaKnown RBP21.03■□□□□ 0.96
VPS29-204ENST00000548259 CRISPLD2Q9H0B8 497 aa21.03■□□□□ 0.96
VPS29-204ENST00000548259 STAP2Q9UGK3 403 aa21.03■□□□□ 0.96
VPS29-204ENST00000548259 ATRNL1Q5VV63 1379 aa21.02■□□□□ 0.96
VPS29-204ENST00000548259 IL15P40933 162 aaPredicted RBP21.02■□□□□ 0.96
VPS29-204ENST00000548259 GCLCP48506 637 aaPredicted RBP21.02■□□□□ 0.96
VPS29-204ENST00000548259 ATG9AQ7Z3C6 839 aa21.02■□□□□ 0.96
VPS29-204ENST00000548259 ANKRD13CQ8N6S4 541 aa21.02■□□□□ 0.96
VPS29-204ENST00000548259 TBC1D2Q9BYX2 928 aa21.02■□□□□ 0.96
VPS29-204ENST00000548259 SIL1Q9H173 461 aa21.02■□□□□ 0.96
VPS29-204ENST00000548259 AK9Q5TCS8 1911 aa21.02■□□□□ 0.95
VPS29-204ENST00000548259 GAKO14976 1311 aa21.02■□□□□ 0.95
VPS29-204ENST00000548259 ZBTB22O15209 634 aa21.01■□□□□ 0.95
VPS29-204ENST00000548259 HMGCRP04035 888 aa21.01■□□□□ 0.95
VPS29-204ENST00000548259 UBTFL1P0CB47 393 aaPredicted RBP21.01■□□□□ 0.95
VPS29-204ENST00000548259 GPR153Q6NV75 609 aa21.01■□□□□ 0.95
VPS29-204ENST00000548259 PROCA1Q8NCQ7 364 aaPredicted RBP21.01■□□□□ 0.95
VPS29-204ENST00000548259 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.01■□□□□ 0.95
VPS29-204ENST00000548259 ABCF2Q9UG63 623 aa21.01■□□□□ 0.95
VPS29-204ENST00000548259 PHKA1P46020 1223 aa21■□□□□ 0.95
VPS29-204ENST00000548259 PICALMQ13492 652 aa21■□□□□ 0.95
VPS29-204ENST00000548259 FAM9BQ8IZU0 186 aa21■□□□□ 0.95
VPS29-204ENST00000548259 FAM163AQ96GL9 167 aaPredicted RBP21■□□□□ 0.95
VPS29-204ENST00000548259 NBPF3Q9H094 633 aa21■□□□□ 0.95
VPS29-204ENST00000548259 BMP8BP34820 402 aa20.99■□□□□ 0.95
VPS29-204ENST00000548259 HMX1Q9NP08 348 aaPredicted RBP20.99■□□□□ 0.95
VPS29-204ENST00000548259 DDTLA6NHG4 134 aaPredicted RBP20.98■□□□□ 0.95
VPS29-204ENST00000548259 TBC1D12O60347 775 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 MAP4K4O95819 1239 aaPredicted RBP20.98■□□□□ 0.95
VPS29-204ENST00000548259 BTDP43251 543 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 CCDC102BQ68D86 513 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 SH3BP5LQ7L8J4 393 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 C7orf61Q8IZ16 206 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 LRCH3Q96II8 777 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 OSBPL5Q9H0X9 879 aaPredicted RBP20.98■□□□□ 0.95
VPS29-204ENST00000548259 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.98■□□□□ 0.95
VPS29-204ENST00000548259 PDS5AQ29RF7 1337 aaKnown RBP20.98■□□□□ 0.95
VPS29-204ENST00000548259 RPTORQ8N122 1335 aa20.98■□□□□ 0.95
VPS29-204ENST00000548259 SOX1O00570 391 aaPredicted RBP20.97■□□□□ 0.95
VPS29-204ENST00000548259 MNX1P50219 401 aaPredicted RBP20.97■□□□□ 0.95
VPS29-204ENST00000548259 ZNF280CQ8ND82 737 aa20.97■□□□□ 0.95
VPS29-204ENST00000548259 SSH1Q8WYL5 1049 aa20.97■□□□□ 0.95
VPS29-204ENST00000548259 E9PSI1 815 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 NPM3O75607 178 aaKnown RBP20.96■□□□□ 0.95
VPS29-204ENST00000548259 LDHCP07864 332 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 GSTO1P78417 241 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 SPP2Q13103 211 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 ERICH6Q7L0X2 663 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 GDF15Q99988 308 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 AS3MTQ9HBK9 375 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 AKAP2Q9Y2D5 859 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 MROH7-TTC4A0A0A0MT08 1334 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 RFX7Q2KHR2 1363 aa20.96■□□□□ 0.95
VPS29-204ENST00000548259 MVPQ14764 893 aaKnown RBP20.95■□□□□ 0.94
VPS29-204ENST00000548259 ALDH1L2Q3SY69 923 aa20.95■□□□□ 0.94
VPS29-204ENST00000548259 TREML2Q5T2D2 321 aa20.95■□□□□ 0.94
VPS29-204ENST00000548259 C11orf49Q9H6J7 331 aa20.95■□□□□ 0.94
VPS29-204ENST00000548259 DDX4Q9NQI0 724 aaKnown RBP20.95■□□□□ 0.94
VPS29-204ENST00000548259 MYH13Q9UKX3 1938 aa20.95■□□□□ 0.94
VPS29-204ENST00000548259 RASGRF1Q13972 1273 aa20.94■□□□□ 0.94
VPS29-204ENST00000548259 DEFB123Q8N688 67 aa20.94■□□□□ 0.94
VPS29-204ENST00000548259 DIS3LQ8TF46 1054 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms