RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RNF181Q9P0P0 153 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 LMNB1P20700 586 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 UBE4AQ14139 1066 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 METTL24Q5JXM2 366 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 C16orf71Q8IYS4 520 aaPredicted RBP9.06□□□□□ -0.96
CD44-228ENST00000528455 OSBPL3Q9H4L5 887 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 STAP2Q9UGK3 403 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 LEMD3Q9Y2U8 911 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 ATP6V0A2Q9Y487 856 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 DLEC1Q9Y238 1755 aa9.06□□□□□ -0.96
CD44-228ENST00000528455 ZC3H4Q9UPT8 1303 aaKnown RBP9.05□□□□□ -0.96
CD44-228ENST00000528455 C21orf2O43822 256 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 RAD21O60216 631 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 SMARCA5O60264 1052 aaPredicted RBP9.05□□□□□ -0.96
CD44-228ENST00000528455 IFIT2P09913 472 aaKnown RBP9.05□□□□□ -0.96
CD44-228ENST00000528455 TIMM10P62072 90 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 CHRNDQ07001 517 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 IRF5Q13568 498 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 TNNI3KQ59H18 835 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 SOGA3Q5TF21 947 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 VGLL2Q8N8G2 317 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 PNMA1Q8ND90 353 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 C7orf43Q8WVR3 580 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 LPIN2Q92539 896 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 GPKOWQ92917 476 aaPredicted RBP eCLIP9.05□□□□□ -0.96
CD44-228ENST00000528455 EAF2Q96CJ1 260 aaPredicted RBP9.05□□□□□ -0.96
CD44-228ENST00000528455 LNPKQ9C0E8 428 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 IL1RAPL2Q9NP60 686 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 PODXL2Q9NZ53 605 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 FPGT-TNNI3KV9GXZ4 949 aa9.05□□□□□ -0.96
CD44-228ENST00000528455 A6NJR5 290 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 CD2BP2O95400 341 aaKnown RBP9.04□□□□□ -0.96
CD44-228ENST00000528455 FGFR2P21802 821 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 ABL2P42684 1182 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 SH3BP2P78314 561 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 RASSF7Q02833 373 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 PUM3Q15397 648 aaKnown RBP9.04□□□□□ -0.96
CD44-228ENST00000528455 LINC01559Q495D7 138 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 PRPF40BQ6NWY9 871 aaKnown RBP9.04□□□□□ -0.96
CD44-228ENST00000528455 PDXDC2PQ6P474 469 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 C15orf52Q6ZUT6 534 aaKnown RBP9.04□□□□□ -0.96
CD44-228ENST00000528455 PLEKHM2Q8IWE5 1019 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 ZNF511Q8NB15 262 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 NEUROD6Q96NK8 337 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 PRKD2Q9BZL6 878 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.04□□□□□ -0.96
CD44-228ENST00000528455 SBF1O95248 1867 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 TTC41PQ6P2S7 1318 aa9.04□□□□□ -0.96
CD44-228ENST00000528455 TNRC6CQ9HCJ0 1690 aaKnown RBP9.04□□□□□ -0.96
CD44-228ENST00000528455 A0A1B0GUL7 405 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 TAF5LO75529 589 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 TOMM70O94826 608 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 IFIT1P09914 478 aaKnown RBP9.03□□□□□ -0.96
CD44-228ENST00000528455 ATP2B4P23634 1241 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 PDE1AP54750 535 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 SKOR1P84550 965 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 ATP2B3Q16720 1220 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 CCDC158Q5M9N0 1113 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 SPRYD7Q5W111 196 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 AACSQ86V21 672 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 MPNDQ8N594 471 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 GPATCH3Q96I76 525 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 ZNF512BQ96KM6 892 aaPredicted RBP9.03□□□□□ -0.96
CD44-228ENST00000528455 ZMYND15Q9H091 742 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 CCDC8Q9H0W5 538 aaPredicted RBP9.03□□□□□ -0.96
CD44-228ENST00000528455 TAOK3Q9H2K8 898 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 NMRK2Q9NPI5 230 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 ANKIB1Q9P2G1 1089 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 NSFL1CQ9UNZ2 370 aaKnown RBP9.03□□□□□ -0.96
CD44-228ENST00000528455 V9GY48 417 aaPredicted RBP9.03□□□□□ -0.96
CD44-228ENST00000528455 XDHP47989 1333 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 SALL3Q9BXA9 1300 aa9.03□□□□□ -0.96
CD44-228ENST00000528455 CEP350Q5VT06 3117 aa9.02□□□□□ -0.96
CD44-228ENST00000528455 NFKBIEO00221 500 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 ERC2O15083 957 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 SLC5A1P13866 664 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 ATP5JP18859 108 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 MX1P20591 662 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 WNT7BP56706 349 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 ERICH6Q7L0X2 663 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 SH3BP5LQ7L8J4 393 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 TICAM2Q86XR7 235 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 RTKN2Q8IZC4 609 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 XAGE2Q96GT9 111 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 OCSTAMPQ9BR26 566 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 VPS33BQ9H267 617 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 RRAGCQ9HB90 399 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 ECHDC1Q9NTX5 307 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 SLX4Q8IY92 1834 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 ZNF804BA4D1E1 1349 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 AOX1Q06278 1338 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 LTBP3Q9NS15 1303 aa9.02□□□□□ -0.97
CD44-228ENST00000528455 SPEF2Q9C093 1822 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 GLTPD2A6NH11 291 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 GLRX3O76003 335 aaKnown RBP9.01□□□□□ -0.97
CD44-228ENST00000528455 COL11A2P13942 1736 aaPredicted RBP9.01□□□□□ -0.97
CD44-228ENST00000528455 PRELPP51888 382 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 GPSM2P81274 684 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 CCDC88AQ3V6T2 1871 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 CCDC93Q567U6 631 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms