RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 DCAF15Q66K64 600 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 ERO1BQ86YB8 467 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 WRNIP1Q96S55 665 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 CSADQ9Y600 493 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 SNCAIPQ9Y6H5 919 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 MYH2Q9UKX2 1941 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 MYH13Q9UKX3 1938 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 SPDYE5A6NIY4 337 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 IRF6O14896 467 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 NPM3O75607 178 aaKnown RBP11.45□□□□□ -0.58
HDAC3-215ENST00000519474 PPP4CP60510 307 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 AACSQ86V21 672 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 ERC1Q8IUD2 1116 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 BRI3BPQ8WY22 251 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 OTUD5Q96G74 571 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 CHMP4BQ9H444 224 aaKnown RBP11.45□□□□□ -0.58
HDAC3-215ENST00000519474 IL1RAPL2Q9NP60 686 aa11.45□□□□□ -0.58
HDAC3-215ENST00000519474 PIH1D3Q9NQM4 214 aaKnown RBP11.45□□□□□ -0.58
HDAC3-215ENST00000519474 RPAP1Q9BWH6 1393 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-215ENST00000519474 FKTNO75072 461 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 RAB11FIP3O75154 756 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 MAP4K4O95819 1239 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-215ENST00000519474 GTF2A2P52657 109 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 OTUD7BQ6GQQ9 843 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 NAA16Q6N069 864 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-215ENST00000519474 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-215ENST00000519474 KIF1BPQ96EK5 621 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 ANTXR1Q9H6X2 564 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 NDUFB9Q9Y6M9 179 aa11.44□□□□□ -0.58
HDAC3-215ENST00000519474 CCL15-CCL14A0A0B4J2E2 113 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 APBB1O00213 710 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 TBC1D12O60347 775 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 IGSF3O75054 1194 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 HMMRO75330 724 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 PPATQ06203 517 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 PICALMQ13492 652 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 CCL15Q16663 113 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 NOL9Q5SY16 702 aaKnown RBP11.43□□□□□ -0.58
HDAC3-215ENST00000519474 CTU1Q7Z7A3 348 aaKnown RBP11.43□□□□□ -0.58
HDAC3-215ENST00000519474 ADGRA1Q86SQ6 560 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 ZSCAN29Q8IWY8 852 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-215ENST00000519474 FAM43AQ8N2R8 423 aa11.43□□□□□ -0.58
HDAC3-215ENST00000519474 SH3RF3Q8TEJ3 882 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-215ENST00000519474 ATRNL1Q5VV63 1379 aa11.42□□□□□ -0.58
HDAC3-215ENST00000519474 CCDC85CA6NKD9 419 aa11.42□□□□□ -0.58
HDAC3-215ENST00000519474 BTBD19C9JJ37 291 aa11.42□□□□□ -0.58
HDAC3-215ENST00000519474 DYNLL1P63167 89 aaKnown RBP11.42□□□□□ -0.58
HDAC3-215ENST00000519474 CRHR2Q13324 411 aa11.42□□□□□ -0.58
HDAC3-215ENST00000519474 PPIL2Q13356 520 aa11.42□□□□□ -0.58
HDAC3-215ENST00000519474 CLASRPQ8N2M8 674 aaKnown RBP11.42□□□□□ -0.58
HDAC3-215ENST00000519474 AATFQ9NY61 560 aaKnown RBP eCLIP11.42□□□□□ -0.58
HDAC3-215ENST00000519474 TAOK2Q9UL54 1235 aa11.42□□□□□ -0.58
HDAC3-215ENST00000519474 RFX7Q2KHR2 1363 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 AK9Q5TCS8 1911 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 CTNND1O60716 968 aaKnown RBP11.41□□□□□ -0.58
HDAC3-215ENST00000519474 BAG3O95817 575 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 CETPP11597 493 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 CYP7A1P22680 504 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 CAP1Q01518 475 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 SNAPC2Q13487 334 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 MOGSQ13724 837 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 RRP1BQ14684 758 aaKnown RBP11.41□□□□□ -0.58
HDAC3-215ENST00000519474 TEX11Q8IYF3 940 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 TGFBRAP1Q8WUH2 860 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 OSBPL5Q9H0X9 879 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-215ENST00000519474 KCNH4Q9UQ05 1017 aa11.41□□□□□ -0.58
HDAC3-215ENST00000519474 CXCL11O14625 94 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 IDH1O75874 414 aaKnown RBP11.4□□□□□ -0.58
HDAC3-215ENST00000519474 PTPRAP18433 802 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 RGS19P49795 217 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 PKN2Q16513 984 aaKnown RBP11.4□□□□□ -0.58
HDAC3-215ENST00000519474 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.4□□□□□ -0.58
HDAC3-215ENST00000519474 DCTPP1Q9H773 170 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.4□□□□□ -0.58
HDAC3-215ENST00000519474 ZFYVE28Q9HCC9 887 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 AFG3L2Q9Y4W6 797 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 ZHX2Q9Y6X8 837 aa11.4□□□□□ -0.58
HDAC3-215ENST00000519474 FAM196BA6NMK8 535 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 SMARCA5O60264 1052 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-215ENST00000519474 IFIT2P09913 472 aaKnown RBP11.39□□□□□ -0.59
HDAC3-215ENST00000519474 PLCG2P16885 1265 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 SP3Q02447 781 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 TAF1CQ15572 869 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-215ENST00000519474 GPAT2Q6NUI2 795 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 METTL16Q86W50 562 aaKnown RBP11.39□□□□□ -0.59
HDAC3-215ENST00000519474 FOXP4Q8IVH2 680 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-215ENST00000519474 SCYL3Q8IZE3 742 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 MAGEB6Q8N7X4 407 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 NOL10Q9BSC4 688 aaKnown RBP11.39□□□□□ -0.59
HDAC3-215ENST00000519474 PI4KBQ9UBF8 816 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 PCDHB15Q9Y5E8 787 aa11.39□□□□□ -0.59
HDAC3-215ENST00000519474 MYO5AQ9Y4I1 1855 aaKnown RBP11.38□□□□□ -0.59
HDAC3-215ENST00000519474 OTOFQ9HC10 1997 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 TLR2O60603 784 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 ATP5JP18859 108 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 MAP3K12Q12852 859 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 OTOP1Q7RTM1 612 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 ANKRD23Q86SG2 305 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 MAPKAPK5Q8IW41 473 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 MIGA1Q8NAN2 632 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms