RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 FAM198AQ9UFP1 575 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 PPP2R3BQ9Y5P8 575 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 FLT1P17948 1338 aa17.46■□□□□ 0.39
BRCA1-223ENST00000494123 ZSCAN29Q8IWY8 852 aaPredicted RBP17.46■□□□□ 0.39
BRCA1-223ENST00000494123 SDR42E1Q8WUS8 393 aa17.46■□□□□ 0.39
BRCA1-223ENST00000494123 FAM151AQ8WW52 585 aa17.46■□□□□ 0.39
BRCA1-223ENST00000494123 NAV1Q8NEY1 1877 aa17.46■□□□□ 0.39
BRCA1-223ENST00000494123 CCDC171Q6TFL3 1326 aa17.46■□□□□ 0.38
BRCA1-223ENST00000494123 RAD50Q92878 1312 aa17.46■□□□□ 0.38
BRCA1-223ENST00000494123 CNTNAP1P78357 1384 aa17.45■□□□□ 0.38
BRCA1-223ENST00000494123 PRKAB2O43741 272 aa17.45■□□□□ 0.38
BRCA1-223ENST00000494123 NPM3O75607 178 aaKnown RBP17.45■□□□□ 0.38
BRCA1-223ENST00000494123 APPP05067 770 aa17.45■□□□□ 0.38
BRCA1-223ENST00000494123 TMEM39BQ9GZU3 492 aa17.45■□□□□ 0.38
BRCA1-223ENST00000494123 ATP8A2Q9NTI2 1148 aa17.45■□□□□ 0.38
BRCA1-223ENST00000494123 ZNF589Q86UQ0 364 aaPredicted RBP17.44■□□□□ 0.38
BRCA1-223ENST00000494123 OSBPL5Q9H0X9 879 aaPredicted RBP17.44■□□□□ 0.38
BRCA1-223ENST00000494123 MYH1P12882 1939 aa17.44■□□□□ 0.38
BRCA1-223ENST00000494123 PRAMEF18Q5VWM3 479 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 NACAP1Q9BZK3 213 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 PATL2C9JE40 543 aaKnown RBP17.43■□□□□ 0.38
BRCA1-223ENST00000494123 NF2P35240 595 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 FSTL1Q12841 308 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 ZFPM1Q8IX07 1006 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 AMOTL1Q8IY63 956 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 CDCA5Q96FF9 252 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 DCP1AQ9NPI6 582 aaPredicted RBP17.43■□□□□ 0.38
BRCA1-223ENST00000494123 MCM9Q9NXL9 1143 aa17.43■□□□□ 0.38
BRCA1-223ENST00000494123 SAP30BPQ9UHR5 308 aaKnown RBP17.43■□□□□ 0.38
BRCA1-223ENST00000494123 RPAP1Q9BWH6 1393 aaPredicted RBP17.42■□□□□ 0.38
BRCA1-223ENST00000494123 TRAF5O00463 557 aa17.42■□□□□ 0.38
BRCA1-223ENST00000494123 SGSM2O43147 1006 aa17.42■□□□□ 0.38
BRCA1-223ENST00000494123 TDO2P48775 406 aa17.42■□□□□ 0.38
BRCA1-223ENST00000494123 DLK2Q6UY11 383 aa17.42■□□□□ 0.38
BRCA1-223ENST00000494123 CSRNP1Q96S65 589 aa17.42■□□□□ 0.38
BRCA1-223ENST00000494123 ESYT1Q9BSJ8 1104 aa17.42■□□□□ 0.38
BRCA1-223ENST00000494123 DHX36Q9H2U1 1008 aaKnown RBP17.42■□□□□ 0.38
BRCA1-223ENST00000494123 COL2A1P02458 1487 aaPredicted RBP17.42■□□□□ 0.38
BRCA1-223ENST00000494123 BAZ2AQ9UIF9 1905 aaKnown RBP17.41■□□□□ 0.38
BRCA1-223ENST00000494123 GSG1L2A8MUP6 293 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 ITGBL1O95965 494 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-223ENST00000494123 POLR3DP05423 398 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-223ENST00000494123 HLA-DOAP06340 250 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 SLC4A8Q2Y0W8 1093 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 SUPT20HL1Q3ZLR7 823 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 VPS53Q5VIR6 699 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 GIMAP6Q6P9H5 292 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 HOOK2Q96ED9 719 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 TEPSINQ96N21 525 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 ZNF408Q9H9D4 720 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 PALD1Q9ULE6 856 aa17.41■□□□□ 0.38
BRCA1-223ENST00000494123 DDX60LQ5H9U9 1706 aaKnown RBP17.4■□□□□ 0.38
BRCA1-223ENST00000494123 ATRNL1Q5VV63 1379 aa17.4■□□□□ 0.38
BRCA1-223ENST00000494123 DDTLA6NHG4 134 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-223ENST00000494123 HSPD1P10809 573 aaKnown RBP17.4■□□□□ 0.38
BRCA1-223ENST00000494123 NBPF12Q5TAG4 269 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-223ENST00000494123 KIAA1211Q6ZU35 1233 aa17.4■□□□□ 0.38
BRCA1-223ENST00000494123 TTC6Q86TZ1 520 aa17.4■□□□□ 0.38
BRCA1-223ENST00000494123 IFNL3Q8IZI9 196 aa17.4■□□□□ 0.38
BRCA1-223ENST00000494123 NAPBQ9H115 298 aa17.4■□□□□ 0.38
BRCA1-223ENST00000494123 IL25Q9H293 177 aa17.4■□□□□ 0.38
BRCA1-223ENST00000494123 MKRN1Q9UHC7 482 aaKnown RBP17.4■□□□□ 0.38
BRCA1-223ENST00000494123 SH3BP5LQ7L8J4 393 aa17.39■□□□□ 0.38
BRCA1-223ENST00000494123 CDAN1Q8IWY9 1227 aa17.39■□□□□ 0.38
BRCA1-223ENST00000494123 EPB41L4AQ9HCS5 686 aaPredicted RBP17.39■□□□□ 0.38
BRCA1-223ENST00000494123 ARPP21Q9UBL0 812 aaPredicted RBP17.39■□□□□ 0.38
BRCA1-223ENST00000494123 TRPM7Q96QT4 1865 aa17.39■□□□□ 0.37
BRCA1-223ENST00000494123 FMR1Q06787 632 aaKnown RBP eCLIP17.39■□□□□ 0.37
BRCA1-223ENST00000494123 TRIM34Q9BYJ4 488 aa17.39■□□□□ 0.37
BRCA1-223ENST00000494123 PI4KBQ9UBF8 816 aa17.39■□□□□ 0.37
BRCA1-223ENST00000494123 USP17L12C9JPN9 530 aa17.38■□□□□ 0.37
BRCA1-223ENST00000494123 USP17L21D6R901 530 aa17.38■□□□□ 0.37
BRCA1-223ENST00000494123 CELF2O95319 508 aaKnown RBP17.38■□□□□ 0.37
BRCA1-223ENST00000494123 DCAF15Q66K64 600 aa17.38■□□□□ 0.37
BRCA1-223ENST00000494123 CRACR2BQ8N4Y2 399 aaPredicted RBP17.38■□□□□ 0.37
BRCA1-223ENST00000494123 DSCC1Q9BVC3 393 aa17.38■□□□□ 0.37
BRCA1-223ENST00000494123 PASKQ96RG2 1323 aa17.37■□□□□ 0.37
BRCA1-223ENST00000494123 MINDY4BA8MYZ0 360 aa17.37■□□□□ 0.37
BRCA1-223ENST00000494123 PRKG1Q13976 671 aa17.37■□□□□ 0.37
BRCA1-223ENST00000494123 TTLL12Q14166 644 aaPredicted RBP17.37■□□□□ 0.37
BRCA1-223ENST00000494123 CTR9Q6PD62 1173 aa17.37■□□□□ 0.37
BRCA1-223ENST00000494123 ANO2Q9NQ90 1003 aa17.37■□□□□ 0.37
BRCA1-223ENST00000494123 LAMB1P07942 1786 aa17.37■□□□□ 0.37
BRCA1-223ENST00000494123 FOXP2O15409 715 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 PPP1R12BO60237 982 aaPredicted RBP17.36■□□□□ 0.37
BRCA1-223ENST00000494123 CYP2D6P10635 497 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 MIGA2Q7L4E1 593 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 SSC5DA1L4H1 1573 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 ZMYM6O95789 1325 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 CYP2D7A0A087X1C5 515 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 FGAP02671 866 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 PLCD1P51178 756 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 ALX1Q15699 326 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 SBK1Q52WX2 424 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 C12orf60Q5U649 245 aa17.36■□□□□ 0.37
BRCA1-223ENST00000494123 FOXP4Q8IVH2 680 aaPredicted RBP17.36■□□□□ 0.37
BRCA1-223ENST00000494123 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.36■□□□□ 0.37
BRCA1-223ENST00000494123 SIPA1L1O43166 1804 aa17.35■□□□□ 0.37
BRCA1-223ENST00000494123 C2orf69Q8N8R5 385 aa17.35■□□□□ 0.37
BRCA1-223ENST00000494123 EHD4Q9H223 541 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms