RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ATG3Q9NT62 314 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 PCMTD2Q9NV79 361 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 CYP8B1Q9UNU6 501 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 SYNGAP1Q96PV0 1343 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-208ENST00000490788 HMX2A2RU54 273 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 ENC1O14682 589 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 CTSBP07858 339 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 CELA3AP09093 270 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 NFIAQ12857 509 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 PCNX4Q63HM2 1172 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 RNF43Q68DV7 783 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 TTBK2Q6IQ55 1244 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 FBXO33Q7Z6M2 555 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 FBXL6Q8N531 539 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 C2CD4AQ8NCU7 369 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-208ENST00000490788 ANKRD24Q8TF21 1146 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 ELMO3Q96BJ8 720 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 CRELD1Q96HD1 420 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 DBNDD2Q9BQY9 259 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 PCDHA4Q9UN74 947 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 DAGLAQ9Y4D2 1042 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 ACTL7BQ9Y614 415 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 ERCC6Q03468 1493 aa3.7□□□□□ -1.82
HMGB1-208ENST00000490788 ZNF862O60290 1169 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 PAGE1O75459 146 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 TRIM37O94972 964 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 NFICP08651 508 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 GRIK1P39086 918 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 CD97P48960 835 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 IRAK1P51617 712 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 TRIM26Q12899 539 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-208ENST00000490788 MAP3K11Q16584 847 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 KIF4BQ2VIQ3 1234 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 SCARA3Q6AZY7 606 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 CDPF1Q6NVV7 123 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 CDC37L1Q7L3B6 337 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 GPBAR1Q8TDU6 330 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 MFSD14AQ96MC6 490 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 TBC1D32Q96NH3 1257 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 OSBPL1AQ9BXW6 950 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 RNF19AQ9NV58 838 aa3.69□□□□□ -1.82
HMGB1-208ENST00000490788 WDR64B1ANS9 1081 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 TMPRSS2O15393 492 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 BMP6P22004 513 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 ST13P50502 369 aaKnown RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 RPS26P62854 115 aaKnown RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 CYP27A1Q02318 531 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 PWP1Q13610 501 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 MEI1Q5TIA1 1274 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 DUSP27Q5VZP5 1158 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 HDXQ7Z353 690 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 PDZD3Q86UT5 571 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 RELL1Q8IUW5 271 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 SMYD4Q8IYR2 804 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 GRIN3AQ8TCU5 1115 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 STK35Q8TDR2 534 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 WDR89Q96FK6 387 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 FANCD2OSQ96PS1 177 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 METTL22Q9BUU2 404 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 NOC4LQ9BVI4 516 aaKnown RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 MIR1-1HGQ9H1L0 117 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 LGR6Q9HBX8 967 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 FAM105AQ9NUU6 356 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 CRIM1Q9NZV1 1036 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 PPP1R9AQ9ULJ8 1098 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 LEMD3Q9Y2U8 911 aa3.68□□□□□ -1.82
HMGB1-208ENST00000490788 CCDC9Q9Y3X0 531 aaKnown RBP3.68□□□□□ -1.82
HMGB1-208ENST00000490788 PRAMEF27A3QJZ7 478 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 KIAA1324LA8MWY0 1029 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-208ENST00000490788 DCDC2CA8MYV0 355 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 BPNT1O95861 308 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 HCLS1P14317 486 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-208ENST00000490788 LIG3P49916 1009 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 ERVK-24P63145 666 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 TAGLNQ01995 201 aaKnown RBP3.67□□□□□ -1.82
HMGB1-208ENST00000490788 ZNF252P-AS1Q0IIN9 211 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 TTLL4Q14679 1199 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 ARHGAP27Q6ZUM4 889 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.67□□□□□ -1.82
HMGB1-208ENST00000490788 KCT2Q8NC54 265 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 SHKBP1Q8TBC3 707 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 EZH1Q92800 747 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-208ENST00000490788 SEMA6CQ9H3T2 930 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 ACSS3Q9H6R3 686 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 PCOLCE2Q9UKZ9 415 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 CSADQ9Y600 493 aa3.67□□□□□ -1.82
HMGB1-208ENST00000490788 USP31Q70CQ4 1352 aa3.66□□□□□ -1.82
HMGB1-208ENST00000490788 TAL1P17542 331 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 SSTR4P31391 388 aa3.66□□□□□ -1.82
HMGB1-208ENST00000490788 GBP2P32456 591 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 ETF1P62495 437 aaKnown RBP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 CPSF6Q16630 551 aaKnown RBP eCLIP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 CYP27C1Q4G0S4 372 aa3.66□□□□□ -1.82
HMGB1-208ENST00000490788 ZC3H12AQ5D1E8 599 aaKnown RBP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 INTS5Q6P9B9 1019 aaKnown RBP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 C12orf40Q86WS4 652 aa3.66□□□□□ -1.82
HMGB1-208ENST00000490788 RNF214Q8ND24 703 aa3.66□□□□□ -1.82
HMGB1-208ENST00000490788 JARID2Q92833 1246 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-208ENST00000490788 DISC1Q9NRI5 854 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms