RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PRPF38BQ5VTL8 546 aaKnown RBP20.7■□□□□ 0.9
VIM-205ENST00000485947 ERO1BQ86YB8 467 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 RHPN1Q8TCX5 695 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 FAM198AQ9UFP1 575 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 ZNF112Q9UJU3 913 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 LAMB1P07942 1786 aa20.69■□□□□ 0.9
VIM-205ENST00000485947 GPR25O00155 361 aa20.69■□□□□ 0.9
VIM-205ENST00000485947 CTU1Q7Z7A3 348 aaKnown RBP20.69■□□□□ 0.9
VIM-205ENST00000485947 NSUN4Q96CB9 384 aaKnown RBP20.69■□□□□ 0.9
VIM-205ENST00000485947 WRNIP1Q96S55 665 aa20.69■□□□□ 0.9
VIM-205ENST00000485947 ELP3Q9H9T3 547 aa20.69■□□□□ 0.9
VIM-205ENST00000485947 TBC1D8O95759 1140 aa20.68■□□□□ 0.9
VIM-205ENST00000485947 PDE4AP27815 886 aa20.68■□□□□ 0.9
VIM-205ENST00000485947 RGS3P49796 1198 aa20.68■□□□□ 0.9
VIM-205ENST00000485947 NFIAQ12857 509 aa20.68■□□□□ 0.9
VIM-205ENST00000485947 DBNDD2Q9BQY9 259 aa20.68■□□□□ 0.9
VIM-205ENST00000485947 ZCCHC17Q9NP64 241 aaKnown RBP20.68■□□□□ 0.9
VIM-205ENST00000485947 LRP2BPQ9P2M1 347 aa20.68■□□□□ 0.9
VIM-205ENST00000485947 APBB1O00213 710 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 GJA5P36382 358 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 BTDP43251 543 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 SOX10P56693 466 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 MAP3K10Q02779 954 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 TCP10Q12799 353 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 MS4A4AQ96JQ5 239 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 RAI14Q9P0K7 980 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 RFX7Q2KHR2 1363 aa20.67■□□□□ 0.9
VIM-205ENST00000485947 WDHD1O75717 1129 aaPredicted RBP20.66■□□□□ 0.9
VIM-205ENST00000485947 PLCG2P16885 1265 aa20.66■□□□□ 0.9
VIM-205ENST00000485947 PPATQ06203 517 aa20.66■□□□□ 0.9
VIM-205ENST00000485947 NOL9Q5SY16 702 aaKnown RBP20.66■□□□□ 0.9
VIM-205ENST00000485947 CERS3Q8IU89 383 aa20.66■□□□□ 0.9
VIM-205ENST00000485947 ZNF296Q8WUU4 475 aaPredicted RBP20.66■□□□□ 0.9
VIM-205ENST00000485947 EAF2Q96CJ1 260 aaPredicted RBP20.66■□□□□ 0.9
VIM-205ENST00000485947 DBNLQ9UJU6 430 aaKnown RBP20.66■□□□□ 0.9
VIM-205ENST00000485947 SNCAIPQ9Y6H5 919 aa20.66■□□□□ 0.9
VIM-205ENST00000485947 MYH2Q9UKX2 1941 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 SMARCA5O60264 1052 aaPredicted RBP20.65■□□□□ 0.9
VIM-205ENST00000485947 FKTNO75072 461 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 BAG3O95817 575 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 CETPP11597 493 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 RHBDL3P58872 404 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 PPIL2Q13356 520 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 PI16Q6UXB8 463 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 SKAP1Q86WV1 359 aa20.65■□□□□ 0.9
VIM-205ENST00000485947 NOL10Q9BSC4 688 aaKnown RBP20.65■□□□□ 0.9
VIM-205ENST00000485947 ATRNL1Q5VV63 1379 aa20.64■□□□□ 0.89
VIM-205ENST00000485947 IGF2BP3O00425 579 aaKnown RBP eCLIP20.64■□□□□ 0.89
VIM-205ENST00000485947 SNAPC2Q13487 334 aa20.64■□□□□ 0.89
VIM-205ENST00000485947 TBC1D9Q6ZT07 1266 aa20.64■□□□□ 0.89
VIM-205ENST00000485947 MIGA2Q7L4E1 593 aa20.64■□□□□ 0.89
VIM-205ENST00000485947 CLASRPQ8N2M8 674 aaKnown RBP20.64■□□□□ 0.89
VIM-205ENST00000485947 ZNF384Q8TF68 577 aa20.64■□□□□ 0.89
VIM-205ENST00000485947 COL2A1P02458 1487 aaPredicted RBP20.63■□□□□ 0.89
VIM-205ENST00000485947 CCL15-CCL14A0A0B4J2E2 113 aa20.63■□□□□ 0.89
VIM-205ENST00000485947 TBC1D12O60347 775 aa20.63■□□□□ 0.89
VIM-205ENST00000485947 PPP4CP60510 307 aa20.63■□□□□ 0.89
VIM-205ENST00000485947 CCL15Q16663 113 aa20.63■□□□□ 0.89
VIM-205ENST00000485947 NAA16Q6N069 864 aaPredicted RBP20.63■□□□□ 0.89
VIM-205ENST00000485947 ZKSCAN4Q969J2 545 aaPredicted RBP20.63■□□□□ 0.89
VIM-205ENST00000485947 OTUD5Q96G74 571 aa20.63■□□□□ 0.89
VIM-205ENST00000485947 OTOFQ9HC10 1997 aa20.63■□□□□ 0.89
VIM-205ENST00000485947 CYP2E1P05181 493 aaPredicted RBP20.62■□□□□ 0.89
VIM-205ENST00000485947 ZSCAN29Q8IWY8 852 aaPredicted RBP20.62■□□□□ 0.89
VIM-205ENST00000485947 PTPN18Q99952 460 aa20.62■□□□□ 0.89
VIM-205ENST00000485947 IL1RAPL2Q9NP60 686 aa20.62■□□□□ 0.89
VIM-205ENST00000485947 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.62■□□□□ 0.89
VIM-205ENST00000485947 SALL3Q9BXA9 1300 aa20.61■□□□□ 0.89
VIM-205ENST00000485947 AACSQ86V21 672 aa20.61■□□□□ 0.89
VIM-205ENST00000485947 PLEKHM2Q8IWE5 1019 aa20.61■□□□□ 0.89
VIM-205ENST00000485947 ZFPM1Q8IX07 1006 aa20.61■□□□□ 0.89
VIM-205ENST00000485947 BRI3BPQ8WY22 251 aa20.61■□□□□ 0.89
VIM-205ENST00000485947 CCDC8Q9H0W5 538 aaPredicted RBP20.61■□□□□ 0.89
VIM-205ENST00000485947 OSBPL3Q9H4L5 887 aa20.61■□□□□ 0.89
VIM-205ENST00000485947 IRF6O14896 467 aa20.6■□□□□ 0.89
VIM-205ENST00000485947 INPP5BP32019 993 aa20.6■□□□□ 0.89
VIM-205ENST00000485947 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.6■□□□□ 0.89
VIM-205ENST00000485947 DHX36Q9H2U1 1008 aaKnown RBP20.6■□□□□ 0.89
VIM-205ENST00000485947 ZFYVE28Q9HCC9 887 aa20.6■□□□□ 0.89
VIM-205ENST00000485947 DDX4Q9NQI0 724 aaKnown RBP20.6■□□□□ 0.89
VIM-205ENST00000485947 SNRKQ9NRH2 765 aa20.6■□□□□ 0.89
VIM-205ENST00000485947 KCNH4Q9UQ05 1017 aa20.6■□□□□ 0.89
VIM-205ENST00000485947 PHF20L1A8MW92 1017 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 CXCL11O14625 94 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 CTNND1O60716 968 aaKnown RBP20.59■□□□□ 0.89
VIM-205ENST00000485947 ZAP70P43403 619 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 CRHR2Q13324 411 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 ARHGEF6Q15052 776 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 TTF1Q15361 905 aaPredicted RBP20.59■□□□□ 0.89
VIM-205ENST00000485947 SH3BP5LQ7L8J4 393 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 SCYL3Q8IZE3 742 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 CNKSR2Q8WXI2 1034 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 ERO1AQ96HE7 468 aa20.59■□□□□ 0.89
VIM-205ENST00000485947 DDTLA6NHG4 134 aaPredicted RBP20.58■□□□□ 0.89
VIM-205ENST00000485947 MX1P20591 662 aa20.58■□□□□ 0.89
VIM-205ENST00000485947 PICALMQ13492 652 aa20.58■□□□□ 0.89
VIM-205ENST00000485947 TEX11Q8IYF3 940 aa20.58■□□□□ 0.89
VIM-205ENST00000485947 OSBPL5Q9H0X9 879 aaPredicted RBP20.58■□□□□ 0.89
VIM-205ENST00000485947 R3HDMLQ9H3Y0 253 aa20.58■□□□□ 0.89
VIM-205ENST00000485947 PICK1Q9NRD5 415 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms