RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CCDC189A1A4V9 331 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 ARHGAP29Q52LW3 1261 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SHC4Q6S5L8 630 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 MMS22LQ6ZRQ5 1243 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 ZSCAN29Q8IWY8 852 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 FAM227BQ96M60 508 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 PARD6BQ9BYG5 372 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 NBPF3Q9H094 633 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 MROH7-TTC4A0A0A0MT08 1334 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 ZFYP08048 801 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 TXLNAP40222 546 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 E2F4Q16254 413 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 IQCDQ96DY2 449 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 NAT10Q9H0A0 1025 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 NWD2Q9ULI1 1742 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 MAST3O60307 1309 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SOS2Q07890 1332 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 PTPDC1A2A3K4 754 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 IFIT2P09913 472 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 CPA1P15085 419 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 FANCCQ00597 558 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 TTLL12Q14166 644 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 ZSCAN26Q16670 478 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 DPF2Q92785 391 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 CDHR2Q9BYE9 1310 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 NNTQ13423 1086 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 TRAPPC11Q7Z392 1133 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SUCLG2Q96I99 432 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 PCMTD1Q96MG8 357 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 GSDMAQ96QA5 445 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 ARGLU1Q9NWB6 273 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 NOVP48745 357 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 MRPL12P52815 198 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SPATS2Q86XZ4 545 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 FNBP4Q8N3X1 1017 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 RBM33Q96EV2 1170 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SLC12A6Q9UHW9 1150 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SPG7Q9UQ90 795 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 KCPQ6ZWJ8 1503 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 KCNV1Q6PIU1 500 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 ZNF507Q8TCN5 953 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 COG1Q8WTW3 980 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 ZNF396Q96N95 335 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 AKAP2Q9Y2D5 859 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 RASSF9O75901 435 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 TNNI3KQ59H18 835 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 TMCO3Q6UWJ1 677 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 RAD9BQ6WBX8 426 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 VGLL2Q8N8G2 317 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 FPGT-TNNI3KV9GXZ4 949 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 PDS5AQ29RF7 1337 aaKnown RBP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 NCKAP5LQ9HCH0 1330 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 ASTE1Q2TB18 679 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 ZNF771Q7L3S4 317 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 METTL22Q9BUU2 404 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 IL1RAPL2Q9NP60 686 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 NEURL1BA8MQ27 555 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 JAK2O60674 1132 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 SMC1AQ14683 1233 aaKnown RBP6.13□□□□□ -1.43
SYNE1-220ENST00000471834 TNFAIP8L3Q5GJ75 292 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 SPECC1LQ69YQ0 1117 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 TEX2Q8IWB9 1127 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 EFCAB13Q8IY85 973 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 CEP120Q8N960 986 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 UBXN4Q92575 508 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 RIPK1Q13546 671 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 MCMDC2Q4G0Z9 681 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 PPP4R3CPQ6ZMV5 832 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 KRBA2Q6ZNG9 492 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 MICALL1Q8N3F8 863 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 EHHADHQ08426 723 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 TSHZ3Q63HK5 1081 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 CAVIN3Q969G5 261 aa6.13□□□□□ -1.43
SYNE1-220ENST00000471834 RIC1Q4ADV7 1423 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 GOLGA6L19H0YKK7 550 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 TRIM37O94972 964 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 HSPD1P10809 573 aaKnown RBP6.12□□□□□ -1.43
SYNE1-220ENST00000471834 ATP1A3P13637 1013 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PFKFB1P16118 471 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 USP14P54578 494 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 CBLBQ13191 982 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 CNPY4Q8N129 248 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 STK11IPQ8N1F8 1099 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 HAUS4Q9H6D7 363 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PCDHA5Q9Y5H7 936 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 NHSL1Q5SYE7 1610 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PJA2O43164 708 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 RXRBP28702 533 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 UBE3CQ15386 1083 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 CMPK2Q5EBM0 449 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 TMEM59LQ9UK28 342 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 CBFA2T2O43439 604 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 ACTN4O43707 911 aaKnown RBP6.12□□□□□ -1.43
SYNE1-220ENST00000471834 SYF2O95926 243 aaKnown RBP6.12□□□□□ -1.43
SYNE1-220ENST00000471834 ANO1Q5XXA6 986 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PACS2Q86VP3 889 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 SPTLC2O15270 562 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 ALADP13716 330 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 ATP2B1P20020 1258 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms