RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 CXCL11O14625 94 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 SLC34A2O95436 690 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 MYCP01106 439 aaPredicted RBP16.38■□□□□ 0.21
CPSF4-210ENST00000469897 ATP8B2P98198 1209 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 MAP3K10Q02779 954 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 PRPF38BQ5VTL8 546 aaKnown RBP16.38■□□□□ 0.21
CPSF4-210ENST00000469897 NBPF11Q86T75 865 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 PICK1Q9NRD5 415 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 RAI14Q9P0K7 980 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 MROH7-TTC4A0A0A0MT08 1334 aa16.38■□□□□ 0.21
CPSF4-210ENST00000469897 LDHCP07864 332 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 PTPRAP18433 802 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 RHBDL3P58872 404 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 POLA2Q14181 598 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 SLC9C1Q4G0N8 1177 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 GPAT2Q6NUI2 795 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 SCYL3Q8IZE3 742 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 NSUN4Q96CB9 384 aaKnown RBP16.37■□□□□ 0.21
CPSF4-210ENST00000469897 ZNF333Q96JL9 665 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 TMEM106CQ9BVX2 250 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 SNRKQ9NRH2 765 aa16.37■□□□□ 0.21
CPSF4-210ENST00000469897 CYP2C8P10632 490 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 CTGFP29279 349 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 ARID4AP29374 1257 aaPredicted RBP16.36■□□□□ 0.21
CPSF4-210ENST00000469897 MCAMP43121 646 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 PSMC4P43686 418 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 GSTO1P78417 241 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 SH3TC2Q8TF17 1288 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 C1orf115Q9H7X2 142 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 LRP2BPQ9P2M1 347 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 AFG3L2Q9Y4W6 797 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 ATRNL1Q5VV63 1379 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 ARAP2Q8WZ64 1704 aa16.36■□□□□ 0.21
CPSF4-210ENST00000469897 CTNND1O60716 968 aaKnown RBP16.35■□□□□ 0.21
CPSF4-210ENST00000469897 SURF6O75683 361 aaKnown RBP16.35■□□□□ 0.21
CPSF4-210ENST00000469897 FMNL1O95466 1100 aaPredicted RBP16.35■□□□□ 0.21
CPSF4-210ENST00000469897 UQCRFS1P1P0C7P4 283 aa16.35■□□□□ 0.21
CPSF4-210ENST00000469897 OS9Q13438 667 aaPredicted RBP16.35■□□□□ 0.21
CPSF4-210ENST00000469897 TNRC18O15417 2968 aaPredicted RBP16.35■□□□□ 0.21
CPSF4-210ENST00000469897 FAM196BA6NMK8 535 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 ZBTB7BO15156 539 aaPredicted RBP16.34■□□□□ 0.21
CPSF4-210ENST00000469897 GNRH1P01148 92 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 SLC4A8Q2Y0W8 1093 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 TNNI3KQ59H18 835 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 FASTKD5Q7L8L6 764 aaKnown RBP16.34■□□□□ 0.21
CPSF4-210ENST00000469897 CCDC84Q86UT8 332 aaPredicted RBP16.34■□□□□ 0.21
CPSF4-210ENST00000469897 SSH3Q8TE77 659 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 TRIM47Q96LD4 638 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 DBNDD2Q9BQY9 259 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.34■□□□□ 0.21
CPSF4-210ENST00000469897 FPGT-TNNI3KV9GXZ4 949 aa16.34■□□□□ 0.21
CPSF4-210ENST00000469897 A0A0G2JLL6 359 aaPredicted RBP16.33■□□□□ 0.2
CPSF4-210ENST00000469897 CCDC158Q5M9N0 1113 aa16.33■□□□□ 0.2
CPSF4-210ENST00000469897 TTC39AQ5SRH9 613 aa16.33■□□□□ 0.2
CPSF4-210ENST00000469897 DIEXFQ68CQ4 756 aaKnown RBP16.33■□□□□ 0.2
CPSF4-210ENST00000469897 GADL1Q6ZQY3 521 aa16.33■□□□□ 0.2
CPSF4-210ENST00000469897 PRRT2Q7Z6L0 340 aaPredicted RBP16.33■□□□□ 0.2
CPSF4-210ENST00000469897 FTSJ3Q8IY81 847 aaKnown RBP16.33■□□□□ 0.2
CPSF4-210ENST00000469897 GPR108Q9NPR9 543 aa16.33■□□□□ 0.2
CPSF4-210ENST00000469897 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.33■□□□□ 0.2
CPSF4-210ENST00000469897 SRRDQ9UH36 339 aa16.33■□□□□ 0.2
CPSF4-210ENST00000469897 TRIM75PA6NK02 468 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 TBC1D12O60347 775 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 NPM3O75607 178 aaKnown RBP16.32■□□□□ 0.2
CPSF4-210ENST00000469897 RLBP1P12271 317 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 OSBPP22059 807 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 HOXD10P28358 340 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 PRMT2P55345 433 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 RFX7Q2KHR2 1363 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 ITPRIPQ8IWB1 547 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 SH3RF3Q8TEJ3 882 aaPredicted RBP16.32■□□□□ 0.2
CPSF4-210ENST00000469897 PARK7Q99497 189 aaKnown RBP16.32■□□□□ 0.2
CPSF4-210ENST00000469897 OTOFQ9HC10 1997 aa16.32■□□□□ 0.2
CPSF4-210ENST00000469897 ADGRA2Q96PE1 1338 aa16.31■□□□□ 0.2
CPSF4-210ENST00000469897 MAP4K4O95819 1239 aaPredicted RBP16.31■□□□□ 0.2
CPSF4-210ENST00000469897 CYP2E1P05181 493 aaPredicted RBP16.31■□□□□ 0.2
CPSF4-210ENST00000469897 TEX11Q8IYF3 940 aa16.31■□□□□ 0.2
CPSF4-210ENST00000469897 OSBPL5Q9H0X9 879 aaPredicted RBP16.31■□□□□ 0.2
CPSF4-210ENST00000469897 BCRP11274 1271 aa16.3■□□□□ 0.2
CPSF4-210ENST00000469897 ZAP70P43403 619 aa16.3■□□□□ 0.2
CPSF4-210ENST00000469897 NAA16Q6N069 864 aaPredicted RBP16.3■□□□□ 0.2
CPSF4-210ENST00000469897 RAET1EQ8TD07 263 aa16.3■□□□□ 0.2
CPSF4-210ENST00000469897 NOL10Q9BSC4 688 aaKnown RBP16.3■□□□□ 0.2
CPSF4-210ENST00000469897 CCDC8Q9H0W5 538 aaPredicted RBP16.3■□□□□ 0.2
CPSF4-210ENST00000469897 AATFQ9NY61 560 aaKnown RBP eCLIP16.3■□□□□ 0.2
CPSF4-210ENST00000469897 NOP58Q9Y2X3 529 aaKnown RBP16.3■□□□□ 0.2
CPSF4-210ENST00000469897 BAG3O95817 575 aa16.29■□□□□ 0.2
CPSF4-210ENST00000469897 SPP2Q13103 211 aa16.29■□□□□ 0.2
CPSF4-210ENST00000469897 RRP1BQ14684 758 aaKnown RBP16.29■□□□□ 0.2
CPSF4-210ENST00000469897 MTFR1Q15390 333 aa16.29■□□□□ 0.2
CPSF4-210ENST00000469897 TGFBRAP1Q8WUH2 860 aa16.29■□□□□ 0.2
CPSF4-210ENST00000469897 EAF2Q96CJ1 260 aaPredicted RBP16.29■□□□□ 0.2
CPSF4-210ENST00000469897 GRK4P32298 578 aa16.28■□□□□ 0.2
CPSF4-210ENST00000469897 FCGRTP55899 365 aa16.28■□□□□ 0.2
CPSF4-210ENST00000469897 PPP4CP60510 307 aa16.28■□□□□ 0.2
CPSF4-210ENST00000469897 ADGRA1Q86SQ6 560 aa16.28■□□□□ 0.2
CPSF4-210ENST00000469897 ZNF512BQ96KM6 892 aaPredicted RBP16.28■□□□□ 0.2
CPSF4-210ENST00000469897 PIH1D3Q9NQM4 214 aaKnown RBP16.28■□□□□ 0.2
CPSF4-210ENST00000469897 TLR7Q9NYK1 1049 aaKnown RBP16.28■□□□□ 0.2
CPSF4-210ENST00000469897 BIN2Q9UBW5 565 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms