RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 MSANTD4Q8NCY6 345 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 CNNM3Q8NE01 707 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 CCDC34Q96HJ3 373 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 ZNF496Q96IT1 587 aaPredicted RBP8.36□□□□□ -1.07
USP48-206ENST00000464577 PANX2Q96RD6 677 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 ALG1Q9BT22 464 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 NAA15Q9BXJ9 866 aaKnown RBP8.36□□□□□ -1.07
USP48-206ENST00000464577 EPC1Q9H2F5 836 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 KCNH3Q9ULD8 1083 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 PCDHA5Q9Y5H7 936 aa8.36□□□□□ -1.07
USP48-206ENST00000464577 KIF13AQ9H1H9 1805 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 NUP188Q5SRE5 1749 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 H3BQF6 201 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 IVLP07476 585 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 CCDC175P0C221 793 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 ACTN2P35609 894 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 CHMP4BP1P59074 171 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 PDE4BQ07343 736 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 LONRF3Q496Y0 759 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 CT47A1Q5JQC4 288 aaPredicted RBP8.35□□□□□ -1.07
USP48-206ENST00000464577 CPLX2Q6PUV4 134 aaKnown RBP8.35□□□□□ -1.07
USP48-206ENST00000464577 NUTM2AQ8IVF1 878 aaPredicted RBP8.35□□□□□ -1.07
USP48-206ENST00000464577 FOXP4Q8IVH2 680 aaPredicted RBP8.35□□□□□ -1.07
USP48-206ENST00000464577 APPBP2Q92624 585 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 TRIM34Q9BYJ4 488 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 EFCC1Q9HA90 598 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 ZCCHC17Q9NP64 241 aaKnown RBP8.35□□□□□ -1.07
USP48-206ENST00000464577 GJB4Q9NTQ9 266 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 RAI14Q9P0K7 980 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 ADAM21Q9UKJ8 722 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 MAN1B1Q9UKM7 699 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 SETD1BQ9UPS6 1966 aaKnown RBP8.35□□□□□ -1.07
USP48-206ENST00000464577 STK36Q9NRP7 1315 aa8.35□□□□□ -1.07
USP48-206ENST00000464577 A0A1B0GUL7 405 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 VGLL3A8MV65 326 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 ERLIN1O75477 346 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 EIF3JO75822 258 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 FGAP02671 866 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 TUBBP07437 444 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 PHKG2P15735 406 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 BMP6P22004 513 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 SARSP49591 514 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 TIMM10P62072 90 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 TTC39AQ5SRH9 613 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 BEND6Q5SZJ8 279 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 HDXQ7Z353 690 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 FAM177A1Q8N128 213 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 PDILTQ8N807 584 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 KRI1Q8N9T8 703 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 CCDC12Q8WUD4 166 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.34□□□□□ -1.072e-8■■■■□ 25.4
USP48-206ENST00000464577 CDC23Q9UJX2 597 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 ANGEL1Q9UNK9 670 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 NFE2L3Q9Y4A8 694 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 PARP4Q9UKK3 1724 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 ATRNO75882 1429 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 MST1RQ04912 1400 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 TRPM3Q9HCF6 1732 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 A0A1B0GTH6 734 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 AKR1B15C9JRZ8 316 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 ATP5J2-PTCD1G3V325 749 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 MYO1CO00159 1063 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 SH2B2O14492 632 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 PTCD1O75127 700 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 ERCC5P28715 1186 aaPredicted RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 CDC27P30260 824 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 LMAN1P49257 510 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 METAP2P50579 478 aaKnown RBP eCLIP8.34□□□□□ -1.07
USP48-206ENST00000464577 HAND2P61296 217 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 MORC3Q14149 939 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 NR1I3Q14994 352 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 POSTNQ15063 836 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 SRLQ86TD4 932 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 TRERF1Q96PN7 1200 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.34□□□□□ -1.07
USP48-206ENST00000464577 GBP3Q9H0R5 595 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 ANKZF1Q9H8Y5 726 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 MRPL44Q9H9J2 332 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 FBXO3Q9UK99 471 aa8.34□□□□□ -1.07
USP48-206ENST00000464577 CCDC9Q9Y3X0 531 aaKnown RBP8.34□□□□□ -1.07
USP48-206ENST00000464577 ZNF213O14771 459 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 KIF5CO60282 957 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 FECHP22830 423 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 CEBPAP49715 358 aaPredicted RBP8.33□□□□□ -1.08
USP48-206ENST00000464577 PLCD1P51178 756 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 ADKP55263 362 aaKnown RBP8.33□□□□□ -1.08
USP48-206ENST00000464577 FMR1Q06787 632 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP48-206ENST00000464577 TRIM29Q14134 588 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 WASHC4Q2M389 1173 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 CTR9Q6PD62 1173 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 LEKR1Q6ZMV7 388 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 TTC5Q8N0Z6 440 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 CLIC6Q96NY7 704 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 CWC25Q9NXE8 425 aaPredicted RBP8.33□□□□□ -1.08
USP48-206ENST00000464577 ADGRG1Q9Y653 693 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 WDR17Q8IZU2 1322 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 NID2Q14112 1375 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 TRDNQ13061 729 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 KARSQ15046 597 aaKnown RBP8.33□□□□□ -1.08
USP48-206ENST00000464577 LRRC24Q50LG9 513 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms