RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ELF1P32519 619 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 PRPHP41219 470 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 TAOK1Q7L7X3 1001 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 SDCCAG8Q86SQ7 713 aaPredicted RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 SMC1BQ8NDV3 1235 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 NAPBQ9H115 298 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 NOP53Q9NZM5 478 aaKnown RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 B4DLN1 442 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 MRPL12P52815 198 aaKnown RBP14.86□□□□□ -0.03
USP40-208ENST00000450966 ARMCX6Q7L4S7 300 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 SRLQ86TD4 932 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 FAM212AQ96EL1 285 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 YIPF3Q9GZM5 350 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 STK38LQ9Y2H1 464 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 AKR1B15C9JRZ8 316 aaPredicted RBP14.86□□□□□ -0.03
USP40-208ENST00000450966 SYKP43405 635 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 PRPF4BQ13523 1007 aaKnown RBP14.86□□□□□ -0.03
USP40-208ENST00000450966 TAF11Q15544 211 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 KCNK9Q9NPC2 374 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 CFAP43Q8NDM7 1665 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 BABAM1Q9NWV8 329 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 TLDC2A0PJX2 215 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 ALDH1L1O75891 902 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 FERP16591 822 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 ETF1P62495 437 aaKnown RBP14.86□□□□□ -0.03
USP40-208ENST00000450966 IP6K1Q92551 441 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 PLVAPQ9BX97 442 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 SMIM23A6NLE4 172 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 TTC36A6NLP5 189 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 MINDY4BA8MYZ0 360 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 ZNF131P52739 623 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 ZNF804AQ7Z570 1209 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 UIMC1Q96RL1 719 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 RAB34Q9BZG1 259 aa14.86□□□□□ -0.03
USP40-208ENST00000450966 ARHGEF12Q9NZN5 1544 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 GCP02774 474 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 SLC20A2Q08357 652 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 SND1Q7KZF4 910 aaKnown RBP eCLIP14.85□□□□□ -0.03
USP40-208ENST00000450966 LMBR1Q8WVP7 490 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 SREK1Q8WXA9 508 aaKnown RBP14.85□□□□□ -0.03
USP40-208ENST00000450966 ANKRD2Q9GZV1 360 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 CBX8Q9HC52 389 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 PLCB1Q9NQ66 1216 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 TMEM2Q9UHN6 1383 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 FLOT1O75955 427 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 PNMA6AP0CW24 399 aaPredicted RBP14.85□□□□□ -0.03
USP40-208ENST00000450966 OSBPL9Q96SU4 736 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 PPANQ9NQ55 473 aaKnown RBP14.85□□□□□ -0.03
USP40-208ENST00000450966 CCDC62Q6P9F0 684 aa14.85□□□□□ -0.03
USP40-208ENST00000450966 GCFC2P16383 781 aaKnown RBP14.84□□□□□ -0.03
USP40-208ENST00000450966 ZNF772Q68DY9 489 aaPredicted RBP14.84□□□□□ -0.03
USP40-208ENST00000450966 ANKRD13DQ6ZTN6 518 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 KIF2CQ99661 725 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 SEC24BO95487 1268 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 LDHAL6AQ6ZMR3 332 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 PSDA5PKW4 1024 aaPredicted RBP14.84□□□□□ -0.03
USP40-208ENST00000450966 TXNDC9O14530 226 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 FLIIQ13045 1269 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 INF2Q27J81 1249 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 SLC30A9Q6PML9 568 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 ARHGAP18Q8N392 663 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 CENPKQ9BS16 269 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 TMEM63CQ9P1W3 806 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 LONRF2Q1L5Z9 754 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 VPS52Q8N1B4 723 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 SLAIN2Q9P270 581 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 EXOC6BQ9Y2D4 811 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 ADGRL2O95490 1459 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 PRC1O43663 620 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 CYP2C19P33261 490 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 NCBP1Q09161 790 aaKnown RBP14.84□□□□□ -0.03
USP40-208ENST00000450966 GSDMBQ8TAX9 411 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 HOOK2Q96ED9 719 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 SPAG5Q96R06 1193 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 ZBTB3Q9H5J0 574 aa14.84□□□□□ -0.03
USP40-208ENST00000450966 SKIP12755 728 aa14.83□□□□□ -0.03
USP40-208ENST00000450966 PLCG2P16885 1265 aa14.83□□□□□ -0.03
USP40-208ENST00000450966 CLCN6P51797 869 aa14.83□□□□□ -0.03
USP40-208ENST00000450966 PDE4BQ07343 736 aa14.83□□□□□ -0.03
USP40-208ENST00000450966 TRAPPC3LQ5T215 181 aa14.83□□□□□ -0.03
USP40-208ENST00000450966 RTL1A6NKG5 1358 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 PRAG1Q86YV5 1406 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 CCDC151A5D8V7 595 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 ATP2A2P16615 1042 aaKnown RBP14.83□□□□□ -0.04
USP40-208ENST00000450966 CCDC26Q8TAB7 109 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 RBM17Q96I25 401 aaKnown RBP14.83□□□□□ -0.04
USP40-208ENST00000450966 RMND1Q9NWS8 449 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 ASXL1Q8IXJ9 1541 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 RNF40O75150 1001 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 IFT88Q13099 833 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 SUPT20HQ8NEM7 779 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 TRIM58Q8NG06 486 aa14.83□□□□□ -0.04
USP40-208ENST00000450966 IDEP14735 1019 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 MYL5Q02045 173 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 PARP10Q53GL7 1025 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 CCDC122Q5T0U0 273 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 TRIM14Q14142 442 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 TMEM266Q2M3C6 531 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 MAP3K21Q5TCX8 1036 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 CRNKL1Q9BZJ0 848 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms