RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 TEX11Q8IYF3 940 aa13.66□□□□□ -0.22
RFFL-204ENST00000414419 ZNF384Q8TF68 577 aa13.66□□□□□ -0.22
RFFL-204ENST00000414419 ZKSCAN4Q969J2 545 aaPredicted RBP13.66□□□□□ -0.22
RFFL-204ENST00000414419 OTUD5Q96G74 571 aa13.66□□□□□ -0.22
RFFL-204ENST00000414419 LRRCC1Q9C099 1032 aa13.66□□□□□ -0.22
RFFL-204ENST00000414419 CAPN15O75808 1086 aa13.65□□□□□ -0.22
RFFL-204ENST00000414419 TBC1D8O95759 1140 aa13.65□□□□□ -0.22
RFFL-204ENST00000414419 GTF2A2P52657 109 aa13.65□□□□□ -0.22
RFFL-204ENST00000414419 RHBDL3P58872 404 aa13.65□□□□□ -0.22
RFFL-204ENST00000414419 MAP3K12Q12852 859 aa13.65□□□□□ -0.22
RFFL-204ENST00000414419 TTF1Q15361 905 aaPredicted RBP13.65□□□□□ -0.22
RFFL-204ENST00000414419 ERO1BQ86YB8 467 aa13.65□□□□□ -0.22
RFFL-204ENST00000414419 PIH1D3Q9NQM4 214 aaKnown RBP13.65□□□□□ -0.22
RFFL-204ENST00000414419 AATFQ9NY61 560 aaKnown RBP eCLIP13.65□□□□□ -0.22
RFFL-204ENST00000414419 SPDYE5A6NIY4 337 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 NPM3O75607 178 aaKnown RBP13.64□□□□□ -0.23
RFFL-204ENST00000414419 CYP7A1P22680 504 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 INPP5BP32019 993 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 GJA5P36382 358 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 DDX4Q9NQI0 724 aaKnown RBP13.64□□□□□ -0.23
RFFL-204ENST00000414419 SNCAIPQ9Y6H5 919 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 NDUFB9Q9Y6M9 179 aa13.64□□□□□ -0.23
RFFL-204ENST00000414419 CDK5RAP2Q96SN8 1893 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 RFX7Q2KHR2 1363 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 CCL15-CCL14A0A0B4J2E2 113 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 DDTLA6NHG4 134 aaPredicted RBP13.63□□□□□ -0.23
RFFL-204ENST00000414419 PPP4CP60510 307 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 PPATQ06203 517 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 DGKZQ13574 1117 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 CCL15Q16663 113 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 TMED8Q6PL24 325 aaPredicted RBP13.63□□□□□ -0.23
RFFL-204ENST00000414419 MAGEB6Q8N7X4 407 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 SH3RF3Q8TEJ3 882 aaPredicted RBP13.63□□□□□ -0.23
RFFL-204ENST00000414419 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.63□□□□□ -0.23
RFFL-204ENST00000414419 DNAJC2Q99543 621 aaKnown RBP13.63□□□□□ -0.23
RFFL-204ENST00000414419 OSBPL5Q9H0X9 879 aaPredicted RBP13.63□□□□□ -0.23
RFFL-204ENST00000414419 ZNF112Q9UJU3 913 aa13.63□□□□□ -0.23
RFFL-204ENST00000414419 TESPA1A2RU30 521 aaPredicted RBP13.62□□□□□ -0.23
RFFL-204ENST00000414419 GPR25O00155 361 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 IGF2BP3O00425 579 aaKnown RBP eCLIP13.62□□□□□ -0.23
RFFL-204ENST00000414419 CETPP11597 493 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 PPIL2Q13356 520 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 SNAPC2Q13487 334 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 SH3BP5LQ7L8J4 393 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 CERS3Q8IU89 383 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 MS4A4AQ96JQ5 239 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 ANTXR1Q9H6X2 564 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 DCTPP1Q9H773 170 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 PICK1Q9NRD5 415 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 FOCADQ5VW36 1801 aa13.62□□□□□ -0.23
RFFL-204ENST00000414419 MYH1P12882 1939 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 GOLIM4O00461 696 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 IRF6O14896 467 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 SMARCA5O60264 1052 aaPredicted RBP13.61□□□□□ -0.23
RFFL-204ENST00000414419 ADGRA1Q86SQ6 560 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 MIGA1Q8NAN2 632 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 TGFBRAP1Q8WUH2 860 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 ZNF296Q8WUU4 475 aaPredicted RBP13.61□□□□□ -0.23
RFFL-204ENST00000414419 CFHR5Q9BXR6 569 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 MCOLN1Q9GZU1 580 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 DHX36Q9H2U1 1008 aaKnown RBP13.61□□□□□ -0.23
RFFL-204ENST00000414419 BOLA2Q9H3K6 86 aa13.61□□□□□ -0.23
RFFL-204ENST00000414419 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.61□□□□□ -0.23
RFFL-204ENST00000414419 ATRNL1Q5VV63 1379 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 TBC1D12O60347 775 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 FKTNO75072 461 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 ATP5JP18859 108 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 USP5P45974 858 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 MAP3K10Q02779 954 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 NOM1Q5C9Z4 860 aaKnown RBP13.6□□□□□ -0.23
RFFL-204ENST00000414419 NOL9Q5SY16 702 aaKnown RBP13.6□□□□□ -0.23
RFFL-204ENST00000414419 SLC9C2Q5TAH2 1124 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 MAPKAPK5Q8IW41 473 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 SCYL3Q8IZE3 742 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 BRI3BPQ8WY22 251 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 ABHD8Q96I13 439 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 GPATCH3Q96I76 525 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 CRBNQ96SW2 442 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 PTPN18Q99952 460 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 TRIM34Q9BYJ4 488 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 PI4KBQ9UBF8 816 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 ZBTB47Q9UFB7 747 aaPredicted RBP13.6□□□□□ -0.23
RFFL-204ENST00000414419 MYH7P12883 1935 aa13.6□□□□□ -0.23
RFFL-204ENST00000414419 COL2A1P02458 1487 aaPredicted RBP13.6□□□□□ -0.23
RFFL-204ENST00000414419 DOCK1Q14185 1865 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 PHF20L1A8MW92 1017 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 CTNND1O60716 968 aaKnown RBP13.59□□□□□ -0.23
RFFL-204ENST00000414419 DYNLL1P63167 89 aaKnown RBP13.59□□□□□ -0.23
RFFL-204ENST00000414419 CRHR2Q13324 411 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 TAF1CQ15572 869 aaPredicted RBP13.59□□□□□ -0.23
RFFL-204ENST00000414419 CTU1Q7Z7A3 348 aaKnown RBP13.59□□□□□ -0.23
RFFL-204ENST00000414419 CRACR2BQ8N4Y2 399 aaPredicted RBP13.59□□□□□ -0.23
RFFL-204ENST00000414419 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.59□□□□□ -0.23
RFFL-204ENST00000414419 ZFYVE28Q9HCC9 887 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 PAG1Q9NWQ8 432 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 HERC5Q9UII4 1024 aaKnown RBP13.59□□□□□ -0.23
RFFL-204ENST00000414419 PCDHB15Q9Y5E8 787 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 ATAD5Q96QE3 1844 aa13.59□□□□□ -0.23
RFFL-204ENST00000414419 MAGEB6P1A0A0J9YX57 407 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms