RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 MYO1CO00159 1063 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 WDHD1O75717 1129 aaPredicted RBP11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 RHOXF2BP0C7M4 288 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 NFATC2IPQ8NCF5 419 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 RHOXF2Q9BQY4 288 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 TOMM22Q9NS69 142 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 AXIN2Q9Y2T1 843 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 CARMIL3Q8ND23 1372 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 A0A0U1RQJ8 604 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 EFCAB8A8MWE9 144 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 H3BQF6 201 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 FOXN1O15353 648 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 MTMR14Q8NCE2 650 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 ATRIPQ8WXE1 791 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 PDE11AQ9HCR9 933 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 USP31Q70CQ4 1352 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 TNRQ92752 1358 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 PEAK1Q9H792 1746 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 VWA3AA6NCI4 1184 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 ZSCAN12O43309 604 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 N4BP1O75113 896 aaKnown RBP11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 RFC5P40937 340 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 USPL1Q5W0Q7 1092 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 OLFM4Q6UX06 510 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 CHMP4CQ96CF2 233 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 BAG1Q99933 345 aaPredicted RBP11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 LLPHQ9BRT6 129 aaKnown RBP11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 RTEL1Q9NZ71 1219 aa11.35□□□□□ -0.59
PTCHD4-202ENST00000398738 ATP5JP18859 108 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 SKIV2LQ15477 1246 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 LONRF2Q1L5Z9 754 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 TSGA10IPQ3SY00 556 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 FOXR1Q6PIV2 292 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 KCNG4Q8TDN1 519 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 HSPD1P10809 573 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 MYL5Q02045 173 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 CCDC158Q5M9N0 1113 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 ANO1Q5XXA6 986 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 KLHL10Q6JEL2 608 aa11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 ALDH8A1Q9H2A2 487 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 SEPT9Q9UHD8 586 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-202ENST00000398738 TBC1D2BQ9UPU7 963 aa11.33□□□□□ -0.59
PTCHD4-202ENST00000398738 PHLPP2Q6ZVD8 1323 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 A0A087WZG4 1122 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 CCP110O43303 1012 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 COBLO75128 1261 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 LMBR1LQ6UX01 489 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 CNNM3Q8NE01 707 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 PHKBQ93100 1093 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 NRKQ7Z2Y5 1582 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 MROH7-TTC4A0A0A0MT08 1334 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 NEURL1BA8MQ27 555 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 HMGB1P09429 215 aaKnown RBP11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 PTPN12Q05209 780 aaKnown RBP11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 GCKRQ14397 625 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 PLEKHO1Q53GL0 409 aaPredicted RBP11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 LEKR1Q6ZMV7 388 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 GRAMD1CQ8IYS0 662 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 FNBP4Q8N3X1 1017 aaPredicted RBP11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 ZNF594Q96JF6 807 aaPredicted RBP11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 GDAP1L1Q96MZ0 367 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 HINFPQ9BQA5 517 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 PAG1Q9NWQ8 432 aa11.33□□□□□ -0.6
PTCHD4-202ENST00000398738 UBE2Q2LH0YL09 131 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 RNMTO43148 476 aaKnown RBP11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 CDC27P30260 824 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 PDE4BQ07343 736 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 KBTBD3Q8NAB2 608 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 EPAS1Q99814 870 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 RABEP2Q9H5N1 569 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 HMX1Q9NP08 348 aaPredicted RBP11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 DENND2AQ9ULE3 1009 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 PCDHA5Q9Y5H7 936 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 CBFA2T2O43439 604 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 PRC1O43663 620 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 STX17P56962 302 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 LONRF3Q496Y0 759 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 PROSER2Q86WR7 435 aaPredicted RBP11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 GPR161Q8N6U8 529 aaKnown RBP11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 FBXO18Q8NFZ0 1043 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 SPIRE2Q8WWL2 714 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 FUT8Q9BYC5 575 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 HSD3B7Q9H2F3 369 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 ZNF330Q9Y3S2 320 aaPredicted RBP11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 TUBGCP6Q96RT7 1819 aa11.32□□□□□ -0.6
PTCHD4-202ENST00000398738 KIF4BQ2VIQ3 1234 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 GOLGA1Q92805 767 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 MYL10Q9BUA6 226 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 SRRTQ9BXP5 876 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 BABAM1Q9NWV8 329 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 CWC15Q9P013 229 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 FAN1Q9Y2M0 1017 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 RRP15Q9Y3B9 282 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 XRN1Q8IZH2 1706 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 A0A1W2PQ27 194 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 A0A1W2PQ64 194 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 A0A1W2PQD8 194 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 SOWAHDA6NJG2 315 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 APPP05067 770 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 IFIT1P09914 478 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms