RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 IL1R1P14778 569 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 ESR2Q92731 530 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 CD209Q9NNX6 404 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 PARP3Q9Y6F1 533 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 TBC1D16Q8TBP0 767 aa29.47■■■□□ 2.31
SHOX2-201ENST00000389589 ORC3Q9UBD5 711 aaPredicted RBP29.47■■■□□ 2.31
SHOX2-201ENST00000389589 NPR1P16066 1061 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 PDE6BP35913 854 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 FAM173BQ6P4H8 233 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 SYNE3Q6ZMZ3 975 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 JAG2Q9Y219 1238 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 SLC12A7Q9Y666 1083 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 NID2Q14112 1375 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 GPR101Q96P66 508 aaPredicted RBP29.46■■■□□ 2.31
SHOX2-201ENST00000389589 CFAP45Q9UL16 551 aa29.46■■■□□ 2.31
SHOX2-201ENST00000389589 SRGNP10124 158 aa29.45■■■□□ 2.31
SHOX2-201ENST00000389589 WTAPQ15007 396 aa29.45■■■□□ 2.31
SHOX2-201ENST00000389589 CTR9Q6PD62 1173 aa29.45■■■□□ 2.31
SHOX2-201ENST00000389589 TTC6Q86TZ1 520 aa29.45■■■□□ 2.31
SHOX2-201ENST00000389589 SENP2Q9HC62 589 aa29.45■■■□□ 2.31
SHOX2-201ENST00000389589 ATP6V0A2Q9Y487 856 aa29.45■■■□□ 2.31
SHOX2-201ENST00000389589 LDHCP07864 332 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 FGRP09769 529 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 ATL3Q6DD88 541 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 LRSAM1Q6UWE0 723 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 RAB11FIP4Q86YS3 637 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 SPATA32Q96LK8 384 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 MMP10P09238 476 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 RCAN1P53805 252 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 C8orf76Q96K31 380 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 DCP1AQ9NPI6 582 aaPredicted RBP29.44■■■□□ 2.3
SHOX2-201ENST00000389589 POLLQ9UGP5 575 aa29.44■■■□□ 2.3
SHOX2-201ENST00000389589 GOLGA8AA7E2F4 631 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 ALDH1B1P30837 517 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 MICU3Q86XE3 530 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 UBAC1Q9BSL1 405 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 ARPP21Q9UBL0 812 aaPredicted RBP29.43■■■□□ 2.3
SHOX2-201ENST00000389589 SBK1Q52WX2 424 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 CCDC183Q5T5S1 534 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 CERS3Q8IU89 383 aa29.43■■■□□ 2.3
SHOX2-201ENST00000389589 COL11A2P13942 1736 aaPredicted RBP29.42■■■□□ 2.3
SHOX2-201ENST00000389589 SYCE3A1L190 88 aa29.42■■■□□ 2.3
SHOX2-201ENST00000389589 USP17L12C9JPN9 530 aa29.42■■■□□ 2.3
SHOX2-201ENST00000389589 USP17L21D6R901 530 aa29.42■■■□□ 2.3
SHOX2-201ENST00000389589 KLHL34Q8N239 644 aa29.42■■■□□ 2.3
SHOX2-201ENST00000389589 LEO1Q8WVC0 666 aaPredicted RBP29.42■■■□□ 2.3
SHOX2-201ENST00000389589 DLEC1Q9Y238 1755 aa29.42■■■□□ 2.3
SHOX2-201ENST00000389589 LETM1O95202 739 aaPredicted RBP29.41■■■□□ 2.3
SHOX2-201ENST00000389589 BAG3O95817 575 aa29.41■■■□□ 2.3
SHOX2-201ENST00000389589 SLC3A2P08195 630 aaKnown RBP29.41■■■□□ 2.3
SHOX2-201ENST00000389589 ADD1P35611 737 aaKnown RBP29.41■■■□□ 2.3
SHOX2-201ENST00000389589 FOSBP53539 338 aa29.41■■■□□ 2.3
SHOX2-201ENST00000389589 NOL10Q9BSC4 688 aaKnown RBP29.41■■■□□ 2.3
SHOX2-201ENST00000389589 TFIP11Q9UBB9 837 aaKnown RBP29.41■■■□□ 2.3
SHOX2-201ENST00000389589 C6orf229H3BNL8 230 aa29.41■■■□□ 2.3
SHOX2-201ENST00000389589 STK11IPQ8N1F8 1099 aa29.41■■■□□ 2.3
SHOX2-201ENST00000389589 FBXO18Q8NFZ0 1043 aa29.41■■■□□ 2.3
SHOX2-201ENST00000389589 ECM29Q5VYK3 1845 aa29.41■■■□□ 2.3
SHOX2-201ENST00000389589 PPFIA3O75145 1194 aa29.4■■■□□ 2.3
SHOX2-201ENST00000389589 PPP4CP60510 307 aa29.4■■■□□ 2.3
SHOX2-201ENST00000389589 TBC1D22AQ8WUA7 517 aa29.4■■■□□ 2.3
SHOX2-201ENST00000389589 ZNF396Q96N95 335 aaPredicted RBP29.4■■■□□ 2.3
SHOX2-201ENST00000389589 CDC27P30260 824 aa29.4■■■□□ 2.3
SHOX2-201ENST00000389589 RGS17Q9UGC6 210 aaPredicted RBP29.4■■■□□ 2.3
SHOX2-201ENST00000389589 QSER1Q2KHR3 1735 aa29.39■■■□□ 2.3
SHOX2-201ENST00000389589 ORC4O43929 436 aa29.39■■■□□ 2.3
SHOX2-201ENST00000389589 MASTLQ96GX5 879 aa29.39■■■□□ 2.3
SHOX2-201ENST00000389589 ZKSCAN3Q9BRR0 538 aa29.39■■■□□ 2.3
SHOX2-201ENST00000389589 CYP2D7A0A087X1C5 515 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 RXRAP19793 462 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 NT5C2P49902 561 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 STK36Q9NRP7 1315 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 GOLGA6L4A6NEF3 574 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 GUCY1B3Q02153 619 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 NTRK3Q16288 839 aa29.38■■■□□ 2.29
SHOX2-201ENST00000389589 FAM217BQ9NTX9 383 aaPredicted RBP29.38■■■□□ 2.29
SHOX2-201ENST00000389589 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.38■■■□□ 2.29
SHOX2-201ENST00000389589 MROH7-TTC4A0A0A0MT08 1334 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 NAV1Q8NEY1 1877 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 CCDC196A0A1B0GTZ2 297 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 IARSP41252 1262 aaKnown RBP29.37■■■□□ 2.29
SHOX2-201ENST00000389589 SEC23AQ15436 765 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 TMX4Q9H1E5 349 aaPredicted RBP29.37■■■□□ 2.29
SHOX2-201ENST00000389589 TNKSO95271 1327 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 FAM205AQ6ZU69 1335 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 CDK5RAP2Q96SN8 1893 aa29.37■■■□□ 2.29
SHOX2-201ENST00000389589 PPP2R5BQ15173 497 aa29.36■■■□□ 2.29
SHOX2-201ENST00000389589 IQCA1Q86XH1 822 aa29.36■■■□□ 2.29
SHOX2-201ENST00000389589 SLF2Q8IX21 1173 aa29.36■■■□□ 2.29
SHOX2-201ENST00000389589 POTEAQ6S8J7 498 aa29.36■■■□□ 2.29
SHOX2-201ENST00000389589 ZSCAN10Q96SZ4 725 aaPredicted RBP29.36■■■□□ 2.29
SHOX2-201ENST00000389589 MYL10Q9BUA6 226 aa29.36■■■□□ 2.29
SHOX2-201ENST00000389589 COA1Q9GZY4 146 aa29.36■■■□□ 2.29
SHOX2-201ENST00000389589 RANBP6O60518 1105 aaKnown RBP29.35■■■□□ 2.29
SHOX2-201ENST00000389589 IFNAR1P17181 557 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 USP5P45974 858 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 RTN1Q16799 776 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 CCDC144CPQ8IYA2 1237 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 MPNDQ8N594 471 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 PDE4BQ07343 736 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms